Analysis of Ligand-Protein Contacts in PDB entry:
6YC1


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 91 ligands in PDB entry 6YC1. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
OLC
A
301 9(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 2
OLC
A
302 22(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 3
OLC
A
303 25(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 4
OLC
A
304 13(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 5
OLC
A
305 25(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 6
OLC
A
306 15(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 7
OLC
A
307 7(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 8
LFA
A
308 7EICOSANE
lig 9
LFA
A
309 8EICOSANE
lig 10
LFA
A
310 8EICOSANE
lig 11
LFA
A
311 4EICOSANE
lig 12
LFA
A
312 6EICOSANE
lig 13
LFA
A
313 16EICOSANE
lig 14
NA
A
314 1SODIUM ION
lig 15
BOG
A
315 20OCTYL BETA-D-GLUCOPYRANOSIDE
lig 16
RET
A
316 20RETINAL
lig 17
OLC
A
317 19(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 18
OLC
A
318 20(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 19
LFA
A
319 20EICOSANE
lig 20
LFA
A
320 9EICOSANE
lig 21
OLC
B
301 22(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 22
OLC
B
302 16(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 23
LFA
B
303 20EICOSANE
lig 24
OLC
B
304 25(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 25
OLC
B
305 20(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 26
OLC
B
306 21(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 27
OLC
B
307 16(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 28
OLC
B
308 7(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 29
LFA
B
309 9EICOSANE
lig 30
LFA
B
310 8EICOSANE
lig 31
LFA
B
311 10EICOSANE
lig 32
LFA
B
312 7EICOSANE
lig 33
NA
B
313 1SODIUM ION
lig 34
BOG
B
314 20OCTYL BETA-D-GLUCOPYRANOSIDE
lig 35
RET
B
315 20RETINAL
lig 36
LFA
B
316 4EICOSANE
lig 37
OLC
C
301 21(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 38
OLC
C
302 20(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 39
OLC
C
303 12(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 40
LFA
C
304 20EICOSANE
lig 41
OLC
C
305 23(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 42
OLC
C
306 22(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 43
OLC
C
307 20(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 44
OLC
C
308 22(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 45
OLC
C
309 16(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 46
OLC
C
310 7(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 47
LFA
C
311 7EICOSANE
lig 48
LFA
C
312 8EICOSANE
lig 49
LFA
C
313 20EICOSANE
lig 50
LFA
C
314 6EICOSANE
lig 51
LFA
C
315 4EICOSANE
lig 52
NA
C
316 1SODIUM ION
lig 53
BOG
C
317 20OCTYL BETA-D-GLUCOPYRANOSIDE
lig 54
RET
C
318 20RETINAL
lig 55
OLC
D
301 18(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 56
OLC
D
302 16(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 57
LFA
D
303 20EICOSANE
lig 58
OLC
D
304 13(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 59
OLC
D
305 25(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 60
OLC
D
306 18(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 61
OLC
D
307 18(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 62
OLC
D
308 14(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 63
OLC
D
309 7(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 64
OLC
D
310 25(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 65
LFA
D
311 20EICOSANE
lig 66
LFA
D
312 20EICOSANE
lig 67
LFA
D
313 8EICOSANE
lig 68
LFA
D
314 17EICOSANE
lig 69
LFA
D
315 7EICOSANE
lig 70
LFA
D
316 6EICOSANE
lig 71
NA
D
317 1SODIUM ION
lig 72
BOG
D
318 20OCTYL BETA-D-GLUCOPYRANOSIDE
lig 73
RET
D
319 20RETINAL
lig 74
LFA
D
320 14EICOSANE
lig 75
OLC
E
301 25(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 76
LFA
E
302 20EICOSANE
lig 77
OLC
E
303 8(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 78
OLC
E
304 16(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 79
OLC
E
305 20(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 80
OLC
E
306 15(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 81
OLC
E
307 15(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 82
OLC
E
308 6(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 83
OLC
E
309 22(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 84
OLC
E
310 20(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 85
LFA
E
311 8EICOSANE
lig 86
LFA
E
312 14EICOSANE
lig 87
LFA
E
313 4EICOSANE
lig 88
LFA
E
314 5EICOSANE
lig 89
NA
E
315 1SODIUM ION
lig 90
BOG
E
316 20OCTYL BETA-D-GLUCOPYRANOSIDE
lig 91
RET
E
317 20RETINAL