Analysis of Ligand-Protein Contacts in PDB entry:
6YC4


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 75 ligands in PDB entry 6YC4. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
OLC
A
301 9(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 2
OLC
A
302 17(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 3
OLC
A
303 7(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 4
OLC
A
304 13(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 5
OLC
A
305 15(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 6
LFA
A
306 7EICOSANE
lig 7
LFA
A
307 8EICOSANE
lig 8
LFA
A
308 8EICOSANE
lig 9
LFA
A
309 4EICOSANE
lig 10
LFA
A
310 6EICOSANE
lig 11
LFA
A
311 7EICOSANE
lig 12
NA
A
312 1SODIUM ION
lig 13
OLC
A
313 20(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 14
RET
A
314 20RETINAL
lig 15
OLC
A
315 18(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 16
GOL
A
316 4GLYCEROL
lig 17
NA
A
317 1SODIUM ION
lig 18
OLC
B
301 21(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 19
OLC
B
302 16(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 20
OLC
B
303 5(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 21
OLC
B
304 12(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 22
LFA
B
305 8EICOSANE
lig 23
LFA
B
306 10EICOSANE
lig 24
LFA
B
307 7EICOSANE
lig 25
NA
B
308 1SODIUM ION
lig 26
RET
B
309 20RETINAL
lig 27
OLC
B
310 20(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 28
OLA
B
311 17OLEIC ACID
lig 29
OLA
B
312 18OLEIC ACID
lig 30
GOL
B
313 4GLYCEROL
lig 31
NA
B
314 1SODIUM ION
lig 32
OLC
C
301 19(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 33
OLC
C
302 8(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 34
OLC
C
303 12(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 35
OLC
C
304 17(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 36
OLC
C
305 16(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 37
LFA
C
306 4EICOSANE
lig 38
LFA
C
307 8EICOSANE
lig 39
LFA
C
308 20EICOSANE
lig 40
NA
C
309 1SODIUM ION
lig 41
OLA
C
310 18OLEIC ACID
lig 42
GOL
C
311 4GLYCEROL
lig 43
RET
C
312 20RETINAL
lig 44
OLC
C
313 16(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 45
NA
C
314 1SODIUM ION
lig 46
OLC
D
301 5(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 47
OLC
D
302 18(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 48
OLC
D
303 5(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 49
OLC
D
304 14(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 50
LFA
D
305 20EICOSANE
lig 51
LFA
D
306 20EICOSANE
lig 52
LFA
D
307 8EICOSANE
lig 53
LFA
D
308 17EICOSANE
lig 54
LFA
D
309 7EICOSANE
lig 55
NA
D
310 1SODIUM ION
lig 56
RET
D
311 20RETINAL
lig 57
OLC
D
312 20(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 58
OLA
D
313 7OLEIC ACID
lig 59
NA
D
314 1SODIUM ION
lig 60
OLC
E
301 19(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 61
OLA
E
302 20OLEIC ACID
lig 62
OLA
E
303 17OLEIC ACID
lig 63
OLA
E
304 15OLEIC ACID
lig 64
OLC
E
305 8(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 65
OLC
E
306 16(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 66
OLC
E
307 20(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 67
OLC
E
308 15(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 68
LFA
E
309 8EICOSANE
lig 69
LFA
E
310 14EICOSANE
lig 70
LFA
E
311 4EICOSANE
lig 71
LFA
E
312 5EICOSANE
lig 72
NA
E
313 1SODIUM ION
lig 73
OLA
E
314 6OLEIC ACID
lig 74
RET
E
315 20RETINAL
lig 75
NA
E
316 1SODIUM ION