Analysis of Ligand-Protein Contacts in PDB entry:
6YCS


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 30 ligands in PDB entry 6YCS. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
OKT
E
2 212'-O-METHYLURIDINE-5'-PHOSPHOROTHIOATE
lig 2
RFJ
E
3 242'-O-METHYL-5'-O-THIOPHOSPHONOGUANOSINE
lig 3
OKQ
E
4 212'-O-METHYLCYTIDINE-5'-PHOSPHOROTHIOATE
lig 4
OKT
E
5 212'-O-METHYLURIDINE-5'-PHOSPHOROTHIOATE
lig 5
PPS
E
6 213'-PHOSPHATE-ADENOSINE-5'-PHOSPHATE SULFAT
lig 6
GS
E
7 22GUANOSINE-5'-THIO-MONOPHOSPHATE
lig 7
OKN
E
8 205'-METHYL-2'-DEOXYCYTIDINE-5'-PHOSPHOROTHI
lig 8
OKN
E
9 205'-METHYL-2'-DEOXYCYTIDINE-5'-PHOSPHOROTHI
lig 9
PST
E
10 20THYMIDINE-5'-THIOPHOSPHATE
lig 10
OKN
E
11 205'-METHYL-2'-DEOXYCYTIDINE-5'-PHOSPHOROTHI
lig 11
PST
E
12 20THYMIDINE-5'-THIOPHOSPHATE
lig 12
GS
E
13 22GUANOSINE-5'-THIO-MONOPHOSPHATE
lig 13
GS
E
14 22GUANOSINE-5'-THIO-MONOPHOSPHATE
lig 14
PPS
E
15 213'-PHOSPHATE-ADENOSINE-5'-PHOSPHATE SULFAT
lig 15
OKT
E
16 142'-O-METHYLURIDINE-5'-PHOSPHOROTHIOATE
lig 16
OKT
E
17 212'-O-METHYLURIDINE-5'-PHOSPHOROTHIOATE
lig 17
OKQ
F
1 182'-O-METHYLCYTIDINE-5'-PHOSPHOROTHIOATE
lig 18
OKT
F
2 212'-O-METHYLURIDINE-5'-PHOSPHOROTHIOATE
lig 19
RFJ
F
3 242'-O-METHYL-5'-O-THIOPHOSPHONOGUANOSINE
lig 20
OKQ
F
4 212'-O-METHYLCYTIDINE-5'-PHOSPHOROTHIOATE
lig 21
OKT
F
5 212'-O-METHYLURIDINE-5'-PHOSPHOROTHIOATE
lig 22
PPS
F
6 213'-PHOSPHATE-ADENOSINE-5'-PHOSPHATE SULFAT
lig 23
GS
F
7 22GUANOSINE-5'-THIO-MONOPHOSPHATE
lig 24
OKN
F
8 205'-METHYL-2'-DEOXYCYTIDINE-5'-PHOSPHOROTHI
lig 25
PST
F
10 20THYMIDINE-5'-THIOPHOSPHATE
lig 26
OKN
F
11 205'-METHYL-2'-DEOXYCYTIDINE-5'-PHOSPHOROTHI
lig 27
PST
F
12 20THYMIDINE-5'-THIOPHOSPHATE
lig 28
GS
F
13 22GUANOSINE-5'-THIO-MONOPHOSPHATE
lig 29
SO4
A
201 5SULFATE ION
lig 30
NA
E
101 1SODIUM ION