Analysis of Ligand-Protein Contacts in PDB entry:
6YDC


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 23 ligands in PDB entry 6YDC. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
HIC
A
1 114-METHYL-HISTIDINE
lig 2
HIC
B
1 114-METHYL-HISTIDINE
lig 3
HIC
C
1 114-METHYL-HISTIDINE
lig 4
HIC
D
1 114-METHYL-HISTIDINE
lig 5
BGC
E
1 12BETA-D-GLUCOPYRANOSE
lig 6
BGC
E
2 11BETA-D-GLUCOPYRANOSE
lig 7
BGC
E
3 11BETA-D-GLUCOPYRANOSE
lig 8
BGC
E
4 11BETA-D-GLUCOPYRANOSE
lig 9
BGC
F
1 12BETA-D-GLUCOPYRANOSE
lig 10
BGC
F
2 11BETA-D-GLUCOPYRANOSE
lig 11
BGC
F
3 11BETA-D-GLUCOPYRANOSE
lig 12
BGC
F
4 11BETA-D-GLUCOPYRANOSE
lig 13
BGC
G
1 12BETA-D-GLUCOPYRANOSE
lig 14
BGC
G
2 11BETA-D-GLUCOPYRANOSE
lig 15
BGC
G
3 11BETA-D-GLUCOPYRANOSE
lig 16
CU
A
301 1COPPER (II) ION
lig 17
SO4
A
306 5SULFATE ION
lig 18
CU
B
301 1COPPER (II) ION
lig 19
SO4
B
306 5SULFATE ION
lig 20
CU
C
301 1COPPER (II) ION
lig 21
SO4
C
303 5SULFATE ION
lig 22
CU
D
301 1COPPER (II) ION
lig 23
SO4
D
302 5SULFATE ION