Analysis of Ligand-Protein Contacts in PDB entry:
6YFY


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 56 ligands in PDB entry 6YFY. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
ZAE
A
1 12N-METHYL-D-PHENYLALANINE
lig 2
DAR
A
4 11D-ARGININE
lig 3
28J
A
5 8D-ALLOISOLEUCINE
lig 4
DTH
A
8 7D-THREONINE
lig 5
ZAE
B
1 12N-METHYL-D-PHENYLALANINE
lig 6
DAR
B
4 11D-ARGININE
lig 7
28J
B
5 8D-ALLOISOLEUCINE
lig 8
DTH
B
8 7D-THREONINE
lig 9
ZAE
E
1 12N-METHYL-D-PHENYLALANINE
lig 10
DAR
E
4 11D-ARGININE
lig 11
28J
E
5 8D-ALLOISOLEUCINE
lig 12
DTH
E
8 7D-THREONINE
lig 13
ZAE
F
1 12N-METHYL-D-PHENYLALANINE
lig 14
DAR
F
4 11D-ARGININE
lig 15
28J
F
5 8D-ALLOISOLEUCINE
lig 16
DTH
F
8 7D-THREONINE
lig 17
DGL
C
2 8D-GLUTAMIC ACID
lig 18
DAL
C
4 5D-ALANINE
lig 19
DAL
C
5 6D-ALANINE
lig 20
DGL
D
2 8D-GLUTAMIC ACID
lig 21
DAL
D
4 5D-ALANINE
lig 22
DAL
D
5 6D-ALANINE
lig 23
DGL
G
2 8D-GLUTAMIC ACID
lig 24
DAL
G
4 5D-ALANINE
lig 25
DAL
G
5 6D-ALANINE
lig 26
DGL
H
2 8D-GLUTAMIC ACID
lig 27
DAL
H
4 5D-ALANINE
lig 28
DAL
H
5 6D-ALANINE
lig 29
MUB
I
1 19N-ACETYL-ALPHA-MURAMIC ACID
lig 30
NAG
I
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 31
MUB
J
1 19N-ACETYL-ALPHA-MURAMIC ACID
lig 32
NAG
J
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 33
MUB
K
1 19N-ACETYL-ALPHA-MURAMIC ACID
lig 34
NAG
K
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 35
MUB
L
1 19N-ACETYL-ALPHA-MURAMIC ACID
lig 36
NAG
L
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 37
2PO
A
101 4PHOSPHONATE
lig 38
2PO
A
102 4PHOSPHONATE
lig 39
P1W
A
103 53-METHYLBUT-2-EN-1-OL
lig 40
P1W
A
104 53-METHYLBUT-2-EN-1-OL
lig 41
P1W
A
105 53-METHYLBUT-2-EN-1-OL
lig 42
P1W
A
106 53-METHYLBUT-2-EN-1-OL
lig 43
P1W
A
107 53-METHYLBUT-2-EN-1-OL
lig 44
2PO
B
101 4PHOSPHONATE
lig 45
2PO
B
102 4PHOSPHONATE
lig 46
P1W
B
103 53-METHYLBUT-2-EN-1-OL
lig 47
2PO
E
101 4PHOSPHONATE
lig 48
2PO
E
102 4PHOSPHONATE
lig 49
P1W
E
103 53-METHYLBUT-2-EN-1-OL
lig 50
P1W
F
101 53-METHYLBUT-2-EN-1-OL
lig 51
P1W
F
102 53-METHYLBUT-2-EN-1-OL
lig 52
2PO
F
103 4PHOSPHONATE
lig 53
2PO
F
104 4PHOSPHONATE
lig 54
P1W
F
105 53-METHYLBUT-2-EN-1-OL
lig 55
P1W
F
106 53-METHYLBUT-2-EN-1-OL
lig 56
P1W
F
107 53-METHYLBUT-2-EN-1-OL