Analysis of Ligand-Protein Contacts in PDB entry:
6YJ4


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 58 ligands in PDB entry 6YJ4. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
FME
A
1 10N-FORMYLMETHIONINE
lig 2
2MR
D
121 13N3, N4-DIMETHYLARGININE
lig 3
FME
H
1 10N-FORMYLMETHIONINE
lig 4
FME
J
1 10N-FORMYLMETHIONINE
lig 5
FME
K
1 10N-FORMYLMETHIONINE
lig 6
FME
L
1 10N-FORMYLMETHIONINE
lig 7
FME
M
1 10N-FORMYLMETHIONINE
lig 8
FME
N
1 10N-FORMYLMETHIONINE
lig 9
3PE
A
501 271,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 10
3PE
A
502 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 11
SF4
B
301 8IRON/SULFUR CLUSTER
lig 12
LMT
B
302 35DODECYL-BETA-D-MALTOSIDE
lig 13
PLC
D
501 27DIUNDECYL PHOSPHATIDYL CHOLINE
lig 14
FES
E
301 4FE2/S2 (INORGANIC) CLUSTER
lig 15
FMN
F
501 31FLAVIN MONONUCLEOTIDE
lig 16
SF4
F
502 8IRON/SULFUR CLUSTER
lig 17
SF4
G
801 8IRON/SULFUR CLUSTER
lig 18
SF4
G
802 8IRON/SULFUR CLUSTER
lig 19
FES
G
803 4FE2/S2 (INORGANIC) CLUSTER
lig 20
PLC
H
601 28DIUNDECYL PHOSPHATIDYL CHOLINE
lig 21
3PE
H
602 221,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 22
3PE
I
6301 461,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 23
SF4
I
6302 8IRON/SULFUR CLUSTER
lig 24
SF4
I
6303 8IRON/SULFUR CLUSTER
lig 25
PLC
L
1001 34DIUNDECYL PHOSPHATIDYL CHOLINE
lig 26
PLC
L
1002 29DIUNDECYL PHOSPHATIDYL CHOLINE
lig 27
3PE
L
1003 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 28
3PE
L
1004 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 29
3PE
L
1005 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 30
3PE
L
1006 331,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 31
PLC
L
1007 42DIUNDECYL PHOSPHATIDYL CHOLINE
lig 32
CDL
M
501 83CARDIOLIPIN
lig 33
3PE
M
502 301,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 34
LMT
M
503 35DODECYL-BETA-D-MALTOSIDE
lig 35
3PE
M
504 401,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 36
PLC
N
2401 42DIUNDECYL PHOSPHATIDYL CHOLINE
lig 37
3PE
N
2402 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 38
CDL
O
401 63CARDIOLIPIN
lig 39
PLC
P
401 35DIUNDECYL PHOSPHATIDYL CHOLINE
lig 40
NDP
P
402 48 PHOSPHATE
lig 41
CDL
P
403 48CARDIOLIPIN
lig 42
ZN
R
201 1ZINC ION
lig 43
EHZ
T
201 34 (3~{S})-3-OXIDANYLTETRADECANETHIOATE
lig 44
EHZ
U
201 35 (3~{S})-3-OXIDANYLTETRADECANETHIOATE
lig 45
LMT
Y
4201 35DODECYL-BETA-D-MALTOSIDE
lig 46
LMT
Y
4202 35DODECYL-BETA-D-MALTOSIDE
lig 47
3PE
Y
4203 241,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 48
LMT
Y
4204 35DODECYL-BETA-D-MALTOSIDE
lig 49
CDL
Z
201 57CARDIOLIPIN
lig 50
3PE
Z
202 321,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 51
3PE
Z
203 431,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 52
CDL
a
101 52CARDIOLIPIN
lig 53
CDL
b
401 48CARDIOLIPIN
lig 54
3PE
b
402 431,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 55
3PE
b
403 261,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 56
3PE
d
4601 241,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 57
PLC
d
4602 27DIUNDECYL PHOSPHATIDYL CHOLINE
lig 58
3PE
d
4603 301,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI