Analysis of Ligand-Protein Contacts in PDB entry:
6YKD


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 5 ligands in PDB entry 6YKD. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
SEP
A
261 10PHOSPHOSERINE
lig 2
OWB
A
400 29 PYRIMIDIN-4-YL]OXYPHENYL]ETHANAMIDE
lig 3
GOL
A
401 6GLYCEROL
lig 4
GOL
A
402 6GLYCEROL
lig 5
ACT
A
403 4ACETATE ION