Analysis of Ligand-Protein Contacts in PDB entry:
6YL5


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 37 ligands in PDB entry 6YL5. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
CBV
A
10 215-BROMOCYTIDINE 5'-(DIHYDROGEN PHOSPHATE)
lig 2
CBV
C
10 215-BROMOCYTIDINE 5'-(DIHYDROGEN PHOSPHATE)
lig 3
CBV
E
10 215-BROMOCYTIDINE 5'-(DIHYDROGEN PHOSPHATE)
lig 4
CBV
G
10 215-BROMOCYTIDINE 5'-(DIHYDROGEN PHOSPHATE)
lig 5
CBV
I
10 215-BROMOCYTIDINE 5'-(DIHYDROGEN PHOSPHATE)
lig 6
CBV
K
10 215-BROMOCYTIDINE 5'-(DIHYDROGEN PHOSPHATE)
lig 7
SAH
A
101 26S-ADENOSYL-L-HOMOCYSTEINE
lig 8
MG
A
102 1MAGNESIUM ION
lig 9
NA
A
103 1SODIUM ION
lig 10
NA
A
104 1SODIUM ION
lig 11
NA
A
105 1SODIUM ION
lig 12
NA
A
106 1SODIUM ION
lig 13
NA
A
107 1SODIUM ION
lig 14
SAH
B
101 19S-ADENOSYL-L-HOMOCYSTEINE
lig 15
NA
B
102 1SODIUM ION
lig 16
NA
B
103 1SODIUM ION
lig 17
SAH
C
101 26S-ADENOSYL-L-HOMOCYSTEINE
lig 18
MG
C
102 1MAGNESIUM ION
lig 19
SO4
D
101 5SULFATE ION
lig 20
MG
D
102 1MAGNESIUM ION
lig 21
SAH
E
101 26S-ADENOSYL-L-HOMOCYSTEINE
lig 22
NA
E
102 1SODIUM ION
lig 23
NA
E
103 1SODIUM ION
lig 24
NA
E
104 1SODIUM ION
lig 25
SAH
F
101 19S-ADENOSYL-L-HOMOCYSTEINE
lig 26
SAH
G
101 26S-ADENOSYL-L-HOMOCYSTEINE
lig 27
SO4
H
101 5SULFATE ION
lig 28
MG
H
102 1MAGNESIUM ION
lig 29
MG
H
103 1MAGNESIUM ION
lig 30
SAH
I
101 26S-ADENOSYL-L-HOMOCYSTEINE
lig 31
SAH
I
102 19S-ADENOSYL-L-HOMOCYSTEINE
lig 32
NA
I
103 1SODIUM ION
lig 33
NA
I
104 1SODIUM ION
lig 34
SAH
K
101 26S-ADENOSYL-L-HOMOCYSTEINE
lig 35
SO4
L
101 5SULFATE ION
lig 36
NA
L
102 1SODIUM ION
lig 37
NA
L
103 1SODIUM ION