Analysis of Ligand-Protein Contacts in PDB entry:
6YMD


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 11 ligands in PDB entry 6YMD. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
PMP
A
501 154'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE
lig 2
EDO
A
502 41,2-ETHANEDIOL
lig 3
EDO
A
503 41,2-ETHANEDIOL
lig 4
MLI
A
504 7MALONATE ION
lig 5
NA
A
505 1SODIUM ION
lig 6
MLI
B
501 7MALONATE ION
lig 7
PMP
B
502 154'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE
lig 8
EDO
B
503 41,2-ETHANEDIOL
lig 9
EDO
B
504 41,2-ETHANEDIOL
lig 10
EDO
B
505 41,2-ETHANEDIOL
lig 11
NA
B
506 1SODIUM ION