Analysis of Ligand-Protein Contacts in PDB entry:
6YMK


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 19 ligands in PDB entry 6YMK. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
CBV
A
10 215-BROMOCYTIDINE 5'-(DIHYDROGEN PHOSPHATE)
lig 2
CBV
C
10 215-BROMOCYTIDINE 5'-(DIHYDROGEN PHOSPHATE)
lig 3
CBV
F
10 215-BROMOCYTIDINE 5'-(DIHYDROGEN PHOSPHATE)
lig 4
CBV
I
10 215-BROMOCYTIDINE 5'-(DIHYDROGEN PHOSPHATE)
lig 5
CBV
M
10 215-BROMOCYTIDINE 5'-(DIHYDROGEN PHOSPHATE)
lig 6
CBV
O
10 215-BROMOCYTIDINE 5'-(DIHYDROGEN PHOSPHATE)
lig 7
MTA
A
101 205'-DEOXY-5'-METHYLTHIOADENOSINE
lig 8
MTA
B
101 205'-DEOXY-5'-METHYLTHIOADENOSINE
lig 9
MTA
C
101 205'-DEOXY-5'-METHYLTHIOADENOSINE
lig 10
SO4
D
101 5SULFATE ION
lig 11
NA
D
102 1SODIUM ION
lig 12
MTA
F
101 205'-DEOXY-5'-METHYLTHIOADENOSINE
lig 13
NA
F
102 1SODIUM ION
lig 14
MTA
G
101 205'-DEOXY-5'-METHYLTHIOADENOSINE
lig 15
MTA
I
101 205'-DEOXY-5'-METHYLTHIOADENOSINE
lig 16
SO4
J
101 5SULFATE ION
lig 17
MTA
M
101 205'-DEOXY-5'-METHYLTHIOADENOSINE
lig 18
MTA
M
102 205'-DEOXY-5'-METHYLTHIOADENOSINE
lig 19
MTA
O
101 205'-DEOXY-5'-METHYLTHIOADENOSINE