Analysis of Ligand-Protein Contacts in PDB entry:
6ZKK


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 51 ligands in PDB entry 6ZKK. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
2MR
4
85 13N3, N4-DIMETHYLARGININE
lig 2
FME
K
1 10N-FORMYLMETHIONINE
lig 3
FME
L
1 10N-FORMYLMETHIONINE
lig 4
FME
M
1 10N-FORMYLMETHIONINE
lig 5
AYA
V
1 8N-ACETYLALANINE
lig 6
AYA
h
1 8N-ACETYLALANINE
lig 7
SEP
k
36 10PHOSPHOSERINE
lig 8
SF4
1
501 8IRON/SULFUR CLUSTER
lig 9
FMN
1
502 31FLAVIN MONONUCLEOTIDE
lig 10
NAI
1
503 441,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTI
lig 11
FES
2
300 4FE2/S2 (INORGANIC) CLUSTER
lig 12
SF4
3
801 8IRON/SULFUR CLUSTER
lig 13
SF4
3
802 8IRON/SULFUR CLUSTER
lig 14
FES
3
803 4FE2/S2 (INORGANIC) CLUSTER
lig 15
K
3
804 1POTASSIUM ION
lig 16
970
4
501 29 C][1]BENZOPYRAN-6(6AH)-ONE
lig 17
3PE
4
502 401,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 18
SF4
6
201 8IRON/SULFUR CLUSTER
lig 19
PC1
6
202 461,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 20
3PE
6
203 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 21
PC1
9
401 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 22
SF4
9
402 8IRON/SULFUR CLUSTER
lig 23
SF4
9
403 8IRON/SULFUR CLUSTER
lig 24
3PE
A
201 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 25
3PE
J
201 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 26
3PE
J
202 401,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 27
3PE
L
1001 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 28
3PE
L
1002 311,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 29
PC1
L
1003 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 30
CDL
L
1004 85CARDIOLIPIN
lig 31
CDL
L
1005 100CARDIOLIPIN
lig 32
3PE
M
501 441,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 33
PC1
M
502 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 34
PC1
M
503 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 35
CDL
M
504 100CARDIOLIPIN
lig 36
3PE
N
401 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 37
CDL
N
402 90CARDIOLIPIN
lig 38
3PE
V
201 271,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 39
3PE
V
202 371,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 40
CDL
V
203 94CARDIOLIPIN
lig 41
CDL
W
201 100CARDIOLIPIN
lig 42
ZMP
X
101 31 BUTANOYL]-BETA-ALANYL}AMINO)ETHYL] TETRAD
lig 43
ZN
b
300 1ZINC ION
lig 44
NDP
d
401 48 PHOSPHATE
lig 45
ZMP
g
201 34 BUTANOYL]-BETA-ALANYL}AMINO)ETHYL] TETRAD
lig 46
CDL
h
201 58CARDIOLIPIN
lig 47
3PE
i
201 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 48
AMP
k
501 23ADENOSINE MONOPHOSPHATE
lig 49
3PE
o
501 311,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 50
MYR
s
201 15MYRISTIC ACID
lig 51
CDL
x
101 75CARDIOLIPIN