Analysis of Ligand-Protein Contacts in PDB entry:
6ZKL


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 54 ligands in PDB entry 6ZKL. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
2MR
4
85 13N3, N4-DIMETHYLARGININE
lig 2
FME
K
1 10N-FORMYLMETHIONINE
lig 3
FME
L
1 10N-FORMYLMETHIONINE
lig 4
FME
M
1 10N-FORMYLMETHIONINE
lig 5
AYA
V
1 8N-ACETYLALANINE
lig 6
AYA
h
1 8N-ACETYLALANINE
lig 7
SEP
k
36 10PHOSPHOSERINE
lig 8
SF4
1
501 8IRON/SULFUR CLUSTER
lig 9
FMN
1
502 31FLAVIN MONONUCLEOTIDE
lig 10
NAI
1
503 441,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTI
lig 11
FES
2
300 4FE2/S2 (INORGANIC) CLUSTER
lig 12
SF4
3
801 8IRON/SULFUR CLUSTER
lig 13
SF4
3
802 8IRON/SULFUR CLUSTER
lig 14
FES
3
803 4FE2/S2 (INORGANIC) CLUSTER
lig 15
K
3
804 1POTASSIUM ION
lig 16
970
6
501 29 C][1]BENZOPYRAN-6(6AH)-ONE
lig 17
SF4
6
502 8IRON/SULFUR CLUSTER
lig 18
3PE
6
503 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 19
PC1
9
401 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 20
SF4
9
402 8IRON/SULFUR CLUSTER
lig 21
SF4
9
403 8IRON/SULFUR CLUSTER
lig 22
PC1
A
401 461,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 23
PC1
A
402 371,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 24
3PE
A
403 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 25
970
H
501 29 C][1]BENZOPYRAN-6(6AH)-ONE
lig 26
3PE
J
201 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 27
3PE
K
101 401,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 28
3PE
L
701 401,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 29
3PE
L
702 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 30
PC1
L
703 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 31
CDL
L
704 100CARDIOLIPIN
lig 32
3PE
L
705 311,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 33
3PE
M
501 441,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 34
PC1
M
502 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 35
3PE
N
401 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 36
3PE
V
201 351,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 37
3PE
V
202 371,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 38
CDL
V
203 94CARDIOLIPIN
lig 39
CDL
V
204 85CARDIOLIPIN
lig 40
CDL
W
201 100CARDIOLIPIN
lig 41
ZMP
X
101 31 BUTANOYL]-BETA-ALANYL}AMINO)ETHYL] TETRAD
lig 42
CDL
Y
201 100CARDIOLIPIN
lig 43
ZN
b
300 1ZINC ION
lig 44
NDP
d
401 48 PHOSPHATE
lig 45
ZMP
g
201 34 BUTANOYL]-BETA-ALANYL}AMINO)ETHYL] TETRAD
lig 46
3PE
i
201 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 47
CDL
i
202 58CARDIOLIPIN
lig 48
AMP
k
501 23ADENOSINE MONOPHOSPHATE
lig 49
3PE
l
501 311,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 50
CDL
o
201 75CARDIOLIPIN
lig 51
CDL
o
202 90CARDIOLIPIN
lig 52
3PE
p
201 271,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 53
MYR
s
201 15MYRISTIC ACID
lig 54
PC1
w
801 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE