Analysis of Ligand-Protein Contacts in PDB entry:
6ZKM


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 47 ligands in PDB entry 6ZKM. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
2MR
4
85 13N3, N4-DIMETHYLARGININE
lig 2
FME
K
1 10N-FORMYLMETHIONINE
lig 3
FME
L
1 10N-FORMYLMETHIONINE
lig 4
FME
M
1 10N-FORMYLMETHIONINE
lig 5
AYA
h
1 8N-ACETYLALANINE
lig 6
SEP
k
36 10PHOSPHOSERINE
lig 7
SF4
1
501 8IRON/SULFUR CLUSTER
lig 8
FMN
1
502 31FLAVIN MONONUCLEOTIDE
lig 9
NAI
1
503 441,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTI
lig 10
FES
2
300 4FE2/S2 (INORGANIC) CLUSTER
lig 11
SF4
3
801 8IRON/SULFUR CLUSTER
lig 12
SF4
3
802 8IRON/SULFUR CLUSTER
lig 13
FES
3
803 4FE2/S2 (INORGANIC) CLUSTER
lig 14
K
3
804 1POTASSIUM ION
lig 15
970
6
501 29 C][1]BENZOPYRAN-6(6AH)-ONE
lig 16
SF4
6
502 8IRON/SULFUR CLUSTER
lig 17
3PE
6
503 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 18
PC1
9
401 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 19
SF4
9
402 8IRON/SULFUR CLUSTER
lig 20
SF4
9
403 8IRON/SULFUR CLUSTER
lig 21
PC1
A
401 461,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 22
PC1
A
402 371,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 23
3PE
A
403 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 24
970
H
501 29 C][1]BENZOPYRAN-6(6AH)-ONE
lig 25
3PE
H
502 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 26
3PE
L
1001 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 27
PC1
L
1002 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 28
CDL
L
1003 100CARDIOLIPIN
lig 29
3PE
L
1004 311,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 30
970
M
601 29 C][1]BENZOPYRAN-6(6AH)-ONE
lig 31
3PE
M
602 441,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 32
PC1
M
603 421,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 33
3PE
N
401 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 34
CDL
W
201 100CARDIOLIPIN
lig 35
ZMP
X
101 31 BUTANOYL]-BETA-ALANYL}AMINO)ETHYL] TETRAD
lig 36
ZN
b
300 1ZINC ION
lig 37
NDP
d
401 48 PHOSPHATE
lig 38
ZMP
g
201 34 BUTANOYL]-BETA-ALANYL}AMINO)ETHYL] TETRAD
lig 39
CDL
h
201 58CARDIOLIPIN
lig 40
3PE
i
201 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 41
AMP
k
501 23ADENOSINE MONOPHOSPHATE
lig 42
3PE
o
501 311,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 43
CDL
o
502 75CARDIOLIPIN
lig 44
CDL
o
503 90CARDIOLIPIN
lig 45
MYR
s
201 15MYRISTIC ACID
lig 46
PC1
w
801 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 47
CDL
y
201 100CARDIOLIPIN