Analysis of Ligand-Protein Contacts in PDB entry:
6ZKO


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 49 ligands in PDB entry 6ZKO. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
2MR
4
85 13N3, N4-DIMETHYLARGININE
lig 2
FME
K
1 10N-FORMYLMETHIONINE
lig 3
FME
L
1 10N-FORMYLMETHIONINE
lig 4
FME
M
1 10N-FORMYLMETHIONINE
lig 5
AYA
V
1 8N-ACETYLALANINE
lig 6
AYA
h
1 8N-ACETYLALANINE
lig 7
SEP
k
36 10PHOSPHOSERINE
lig 8
SF4
1
500 8IRON/SULFUR CLUSTER
lig 9
FMN
1
501 31FLAVIN MONONUCLEOTIDE
lig 10
FES
2
300 4FE2/S2 (INORGANIC) CLUSTER
lig 11
SF4
3
801 8IRON/SULFUR CLUSTER
lig 12
SF4
3
802 8IRON/SULFUR CLUSTER
lig 13
FES
3
803 4FE2/S2 (INORGANIC) CLUSTER
lig 14
K
3
804 1POTASSIUM ION
lig 15
SF4
6
201 8IRON/SULFUR CLUSTER
lig 16
PC1
6
202 461,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 17
PC1
9
401 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 18
SF4
9
402 8IRON/SULFUR CLUSTER
lig 19
SF4
9
403 8IRON/SULFUR CLUSTER
lig 20
3PE
A
201 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 21
3PE
H
401 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 22
3PE
J
201 401,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 23
3PE
L
701 401,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 24
3PE
L
702 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 25
3PE
L
703 311,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 26
PC1
L
704 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 27
CDL
L
705 100CARDIOLIPIN
lig 28
3PE
M
501 441,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 29
PC1
M
502 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 30
PC1
M
503 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 31
3PE
N
401 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 32
3PE
N
402 311,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 33
CDL
N
403 90CARDIOLIPIN
lig 34
3PE
V
201 371,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 35
CDL
V
202 94CARDIOLIPIN
lig 36
CDL
V
203 85CARDIOLIPIN
lig 37
CDL
W
201 100CARDIOLIPIN
lig 38
ZMP
X
101 31 BUTANOYL]-BETA-ALANYL}AMINO)ETHYL] TETRAD
lig 39
ZN
b
300 1ZINC ION
lig 40
NDP
d
401 48 PHOSPHATE
lig 41
ZMP
g
201 34 BUTANOYL]-BETA-ALANYL}AMINO)ETHYL] TETRAD
lig 42
3PE
i
501 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 43
3PE
i
502 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 44
AMP
k
501 23ADENOSINE MONOPHOSPHATE
lig 45
3PE
p
201 271,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 46
MYR
s
201 15MYRISTIC ACID
lig 47
CDL
x
101 75CARDIOLIPIN
lig 48
CDL
y
201 100CARDIOLIPIN
lig 49
CDL
z
101 58CARDIOLIPIN