Analysis of Ligand-Protein Contacts in PDB entry:
6ZKU


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 42 ligands in PDB entry 6ZKU. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
2MR
4
85 13N3, N4-DIMETHYLARGININE
lig 2
FME
K
1 10N-FORMYLMETHIONINE
lig 3
FME
L
1 10N-FORMYLMETHIONINE
lig 4
FME
M
1 10N-FORMYLMETHIONINE
lig 5
AYA
h
1 8N-ACETYLALANINE
lig 6
SEP
k
36 10PHOSPHOSERINE
lig 7
SF4
1
500 8IRON/SULFUR CLUSTER
lig 8
FMN
1
501 31FLAVIN MONONUCLEOTIDE
lig 9
FES
2
300 4FE2/S2 (INORGANIC) CLUSTER
lig 10
SF4
3
801 8IRON/SULFUR CLUSTER
lig 11
SF4
3
802 8IRON/SULFUR CLUSTER
lig 12
FES
3
803 4FE2/S2 (INORGANIC) CLUSTER
lig 13
K
3
804 1POTASSIUM ION
lig 14
SF4
6
201 8IRON/SULFUR CLUSTER
lig 15
3PE
6
202 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 16
PC1
9
401 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 17
SF4
9
402 8IRON/SULFUR CLUSTER
lig 18
SF4
9
403 8IRON/SULFUR CLUSTER
lig 19
PC1
A
401 461,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 20
PC1
A
402 371,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 21
3PE
A
403 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 22
3PE
H
401 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 23
3PE
L
1001 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 24
PC1
L
1002 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 25
3PE
L
1003 311,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 26
CDL
M
501 100CARDIOLIPIN
lig 27
3PE
N
401 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 28
3PE
N
402 311,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 29
PC1
V
201 361,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 30
CDL
W
201 100CARDIOLIPIN
lig 31
ZMP
X
101 31 BUTANOYL]-BETA-ALANYL}AMINO)ETHYL] TETRAD
lig 32
CDL
Y
201 100CARDIOLIPIN
lig 33
ZN
b
300 1ZINC ION
lig 34
NDP
d
401 48 PHOSPHATE
lig 35
ZMP
g
201 34 BUTANOYL]-BETA-ALANYL}AMINO)ETHYL] TETRAD
lig 36
3PE
i
201 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 37
AMP
k
501 23ADENOSINE MONOPHOSPHATE
lig 38
CDL
o
201 90CARDIOLIPIN
lig 39
MYR
s
201 15MYRISTIC ACID
lig 40
PC1
w
801 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 41
CDL
x
101 75CARDIOLIPIN
lig 42
CDL
z
101 58CARDIOLIPIN