Analysis of Ligand-Protein Contacts in PDB entry:
7QSD


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 52 ligands in PDB entry 7QSD. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
FME
A
1 10N-FORMYLMETHIONINE
lig 2
2MR
D
85 13N3, N4-DIMETHYLARGININE
lig 3
FME
H
1 10N-FORMYLMETHIONINE
lig 4
FME
J
1 10N-FORMYLMETHIONINE
lig 5
FME
K
1 10N-FORMYLMETHIONINE
lig 6
FME
L
1 10N-FORMYLMETHIONINE
lig 7
FME
M
1 10N-FORMYLMETHIONINE
lig 8
FME
N
1 10N-FORMYLMETHIONINE
lig 9
AYA
Y
1 8N-ACETYLALANINE
lig 10
AME
d
1 11N-ACETYLMETHIONINE
lig 11
SAC
i
1 9N-ACETYL-SERINE
lig 12
AYA
r
1 8N-ACETYLALANINE
lig 13
PC1
A
701 211,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 14
3PE
A
702 391,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 15
SF4
B
201 8IRON/SULFUR CLUSTER
lig 16
PC1
B
202 431,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 17
PC1
B
203 351,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 18
FES
E
301 4FE2/S2 (INORGANIC) CLUSTER
lig 19
FMN
F
501 31FLAVIN MONONUCLEOTIDE
lig 20
SF4
F
502 8IRON/SULFUR CLUSTER
lig 21
SF4
G
801 8IRON/SULFUR CLUSTER
lig 22
SF4
G
802 8IRON/SULFUR CLUSTER
lig 23
FES
G
803 4FE2/S2 (INORGANIC) CLUSTER
lig 24
3PE
I
201 421,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 25
SF4
I
202 8IRON/SULFUR CLUSTER
lig 26
SF4
I
203 8IRON/SULFUR CLUSTER
lig 27
3PE
J
401 281,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 28
3PE
K
101 391,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 29
3PE
L
701 381,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 30
CDL
L
702 62CARDIOLIPIN
lig 31
3PE
L
703 451,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 32
3PE
L
704 351,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 33
3PE
M
601 461,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 34
LMT
M
602 35DODECYL-BETA-D-MALTOSIDE
lig 35
3PE
M
603 401,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 36
LMT
N
901 35DODECYL-BETA-D-MALTOSIDE
lig 37
3PE
N
902 441,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 38
3PE
N
903 411,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 39
GTP
O
401 32GUANOSINE-5'-TRIPHOSPHATE
lig 40
MG
O
402 1MAGNESIUM ION
lig 41
NDP
P
501 48 PHOSPHATE
lig 42
ZN
R
201 1ZINC ION
lig 43
EHZ
T
101 37 (3~{S})-3-OXIDANYLTETRADECANETHIOATE
lig 44
EHZ
U
101 37 (3~{S})-3-OXIDANYLTETRADECANETHIOATE
lig 45
3PE
X
401 311,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 46
CDL
Y
701 50CARDIOLIPIN
lig 47
LMT
b
301 35DODECYL-BETA-D-MALTOSIDE
lig 48
3PE
c
301 381,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 49
PC1
d
501 261,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 50
PC1
g
1501 491,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 51
CDL
h
1001 64CARDIOLIPIN
lig 52
CDL
q
201 69CARDIOLIPIN