Analysis of Ligand-Protein Contacts in PDB entry:
7YMI


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 312 ligands in PDB entry 7YMI. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
CL7
A
401 65CHLOROPHYLL D
lig 2
PHO
A
402 64PHEOPHYTIN A
lig 3
CL7
A
403 55CHLOROPHYLL D
lig 4
8CT
A
404 40 DIHYDRO-BETA,BETA-CAROTENE
lig 5
SQD
A
405 34 GLUCOPYRANOSYL]-SN-GLYCEROL
lig 6
CL7
A
406 65CHLOROPHYLL D
lig 7
LHG
A
407 461,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 8
CL7
B
601 41CHLOROPHYLL D
lig 9
CL7
B
602 60CHLOROPHYLL D
lig 10
CL7
B
603 65CHLOROPHYLL D
lig 11
CL7
B
604 65CHLOROPHYLL D
lig 12
CL7
B
605 65CHLOROPHYLL D
lig 13
CL7
B
606 55CHLOROPHYLL D
lig 14
CL7
B
607 60CHLOROPHYLL D
lig 15
CL7
B
608 65CHLOROPHYLL D
lig 16
CL7
B
609 65CHLOROPHYLL D
lig 17
CL7
B
610 65CHLOROPHYLL D
lig 18
CL7
B
611 65CHLOROPHYLL D
lig 19
CL7
B
612 65CHLOROPHYLL D
lig 20
CL7
B
613 55CHLOROPHYLL D
lig 21
CL7
B
614 60CHLOROPHYLL D
lig 22
CL7
B
615 50CHLOROPHYLL D
lig 23
CL7
B
616 45CHLOROPHYLL D
lig 24
8CT
B
617 40 DIHYDRO-BETA,BETA-CAROTENE
lig 25
8CT
B
618 40 DIHYDRO-BETA,BETA-CAROTENE
lig 26
8CT
B
619 40 DIHYDRO-BETA,BETA-CAROTENE
lig 27
SQD
B
620 54 GLUCOPYRANOSYL]-SN-GLYCEROL
lig 28
LMG
B
621 511,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 29
CL7
B
622 45CHLOROPHYLL D
lig 30
LHG
B
623 451,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 31
DGD
B
624 62DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 32
LHG
B
625 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 33
SQD
B
626 34 GLUCOPYRANOSYL]-SN-GLYCEROL
lig 34
8CT
B
627 40 DIHYDRO-BETA,BETA-CAROTENE
lig 35
LMG
C
501 501,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 36
CL7
C
502 65CHLOROPHYLL D
lig 37
CL7
C
503 60CHLOROPHYLL D
lig 38
CL7
C
504 65CHLOROPHYLL D
lig 39
CL7
C
505 55CHLOROPHYLL D
lig 40
CL7
C
506 65CHLOROPHYLL D
lig 41
CL7
C
507 60CHLOROPHYLL D
lig 42
CL7
C
508 65CHLOROPHYLL D
lig 43
CL7
C
509 65CHLOROPHYLL D
lig 44
CL7
C
510 65CHLOROPHYLL D
lig 45
CL7
C
511 65CHLOROPHYLL D
lig 46
CL7
C
512 42CHLOROPHYLL D
lig 47
CL7
C
513 41CHLOROPHYLL D
lig 48
CL7
C
514 45CHLOROPHYLL D
lig 49
8CT
C
515 40 DIHYDRO-BETA,BETA-CAROTENE
lig 50
8CT
C
516 40 DIHYDRO-BETA,BETA-CAROTENE
lig 51
DGD
C
517 62DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 52
CL7
C
518 41CHLOROPHYLL D
lig 53
8CT
C
519 40 DIHYDRO-BETA,BETA-CAROTENE
lig 54
FE2
D
401 1FE (II) ION
lig 55
CL7
D
402 50CHLOROPHYLL D
lig 56
BCT
D
403 4BICARBONATE ION
lig 57
CL7
D
404 58CHLOROPHYLL D
lig 58
CL7
D
405 45CHLOROPHYLL D
lig 59
8CT
D
406 40 DIHYDRO-BETA,BETA-CAROTENE
lig 60
PL9
D
407 55 BENZOQUINONE
lig 61
PHO
D
408 64PHEOPHYTIN A
lig 62
LHG
D
409 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 63
LMG
D
410 331,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 64
HEM
F
101 43PROTOPORPHYRIN IX CONTAINING FE
lig 65
8CT
K
101 40 DIHYDRO-BETA,BETA-CAROTENE
lig 66
CL7
2
501 65CHLOROPHYLL D
lig 67
CL7
2
502 65CHLOROPHYLL D
lig 68
CL7
2
503 65CHLOROPHYLL D
lig 69
CL7
2
504 45CHLOROPHYLL D
lig 70
CL7
2
505 65CHLOROPHYLL D
lig 71
CL7
2
506 65CHLOROPHYLL D
lig 72
CL7
2
507 65CHLOROPHYLL D
lig 73
CL7
2
508 45CHLOROPHYLL D
lig 74
CL7
2
509 65CHLOROPHYLL D
lig 75
CL7
2
510 65CHLOROPHYLL D
lig 76
CL7
2
511 60CHLOROPHYLL D
lig 77
CL7
2
512 65CHLOROPHYLL D
lig 78
CL7
2
513 45CHLOROPHYLL D
lig 79
CL7
2
514 45CHLOROPHYLL D
lig 80
CL7
2
515 45CHLOROPHYLL D
lig 81
CL7
2
516 65CHLOROPHYLL D
lig 82
CL7
2
517 65CHLOROPHYLL D
lig 83
CL7
2
518 65CHLOROPHYLL D
lig 84
ZEX
2
519 42 YL}-2,5,5-TRIMETHYLCYCLOHEX-3-EN-1-OL
lig 85
ZEX
2
520 42 YL}-2,5,5-TRIMETHYLCYCLOHEX-3-EN-1-OL
lig 86
ZEX
2
521 42 YL}-2,5,5-TRIMETHYLCYCLOHEX-3-EN-1-OL
lig 87
SQD
2
522 50 GLUCOPYRANOSYL]-SN-GLYCEROL
lig 88
ZEX
2
523 42 YL}-2,5,5-TRIMETHYLCYCLOHEX-3-EN-1-OL
lig 89
SQD
2
524 41 GLUCOPYRANOSYL]-SN-GLYCEROL
lig 90
ZEX
2
525 42 YL}-2,5,5-TRIMETHYLCYCLOHEX-3-EN-1-OL
lig 91
LMG
1
401 511,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 92
CL7
1
402 60CHLOROPHYLL D
lig 93
CL7
1
403 60CHLOROPHYLL D
lig 94
CL7
1
404 65CHLOROPHYLL D
lig 95
CL7
1
405 45CHLOROPHYLL D
lig 96
CL7
1
406 62CHLOROPHYLL D
lig 97
CL7
1
407 41CHLOROPHYLL D
lig 98
CL7
1
408 65CHLOROPHYLL D
lig 99
CL7
1
409 45CHLOROPHYLL D
lig 100
CL7
1
410 65CHLOROPHYLL D
lig 101
CL7
1
411 45CHLOROPHYLL D
lig 102
CL7
1
412 45CHLOROPHYLL D
lig 103
CL7
1
413 41CHLOROPHYLL D
lig 104
CL7
1
414 41CHLOROPHYLL D
lig 105
CL7
1
415 41CHLOROPHYLL D
lig 106
CL7
1
416 41CHLOROPHYLL D
lig 107
CL7
1
417 55CHLOROPHYLL D
lig 108
CL7
1
418 65CHLOROPHYLL D
lig 109
CL7
1
419 45CHLOROPHYLL D
lig 110
CL7
1
420 45CHLOROPHYLL D
lig 111
ZEX
1
421 42 YL}-2,5,5-TRIMETHYLCYCLOHEX-3-EN-1-OL
lig 112
ZEX
1
422 42 YL}-2,5,5-TRIMETHYLCYCLOHEX-3-EN-1-OL
lig 113
SQD
1
423 32 GLUCOPYRANOSYL]-SN-GLYCEROL
lig 114
CL7
3
501 65CHLOROPHYLL D
lig 115
CL7
3
502 58CHLOROPHYLL D
lig 116
CL7
3
503 65CHLOROPHYLL D
lig 117
CL7
3
504 65CHLOROPHYLL D
lig 118
CL7
3
505 65CHLOROPHYLL D
lig 119
CL7
3
506 45CHLOROPHYLL D
lig 120
CL7
3
507 65CHLOROPHYLL D
lig 121
CL7
3
508 65CHLOROPHYLL D
lig 122
CL7
3
509 65CHLOROPHYLL D
lig 123
CL7
3
510 65CHLOROPHYLL D
lig 124
CL7
3
511 65CHLOROPHYLL D
lig 125
CL7
3
512 55CHLOROPHYLL D
lig 126
CL7
3
513 45CHLOROPHYLL D
lig 127
CL7
3
514 45CHLOROPHYLL D
lig 128
CL7
3
515 41CHLOROPHYLL D
lig 129
CL7
3
516 55CHLOROPHYLL D
lig 130
CL7
3
517 50CHLOROPHYLL D
lig 131
CL7
3
518 45CHLOROPHYLL D
lig 132
ZEX
3
519 42 YL}-2,5,5-TRIMETHYLCYCLOHEX-3-EN-1-OL
lig 133
ZEX
3
520 42 YL}-2,5,5-TRIMETHYLCYCLOHEX-3-EN-1-OL
lig 134
SQD
3
521 46 GLUCOPYRANOSYL]-SN-GLYCEROL
lig 135
ZEX
3
522 42 YL}-2,5,5-TRIMETHYLCYCLOHEX-3-EN-1-OL
lig 136
SQD
3
523 50 GLUCOPYRANOSYL]-SN-GLYCEROL
lig 137
LHG
3
524 361,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 138
ZEX
3
525 42 YL}-2,5,5-TRIMETHYLCYCLOHEX-3-EN-1-OL
lig 139
LHG
4
401 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 140
8CT
4
402 40 DIHYDRO-BETA,BETA-CAROTENE
lig 141
ZEX
4
403 42 YL}-2,5,5-TRIMETHYLCYCLOHEX-3-EN-1-OL
lig 142
CL7
4
404 65CHLOROPHYLL D
lig 143
CL7
4
405 65CHLOROPHYLL D
lig 144
CL7
4
406 65CHLOROPHYLL D
lig 145
CL7
4
407 41CHLOROPHYLL D
lig 146
CL7
4
408 45CHLOROPHYLL D
lig 147
CL7
4
409 60CHLOROPHYLL D
lig 148
CL7
4
410 45CHLOROPHYLL D
lig 149
CL7
4
411 65CHLOROPHYLL D
lig 150
CL7
4
412 65CHLOROPHYLL D
lig 151
CL7
4
413 60CHLOROPHYLL D
lig 152
CL7
4
414 53CHLOROPHYLL D
lig 153
CL7
4
415 45CHLOROPHYLL D
lig 154
CL7
4
416 41CHLOROPHYLL D
lig 155
CL7
4
417 42CHLOROPHYLL D
lig 156
ZEX
4
418 42 YL}-2,5,5-TRIMETHYLCYCLOHEX-3-EN-1-OL
lig 157
ZEX
4
419 42 YL}-2,5,5-TRIMETHYLCYCLOHEX-3-EN-1-OL
lig 158
ZEX
4
420 42 YL}-2,5,5-TRIMETHYLCYCLOHEX-3-EN-1-OL
lig 159
CL7
a
401 65CHLOROPHYLL D
lig 160
PHO
a
402 64PHEOPHYTIN A
lig 161
CL7
a
403 55CHLOROPHYLL D
lig 162
8CT
a
404 40 DIHYDRO-BETA,BETA-CAROTENE
lig 163
CL7
a
405 65CHLOROPHYLL D
lig 164
LHG
a
406 461,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 165
8CT
b
601 40 DIHYDRO-BETA,BETA-CAROTENE
lig 166
CL7
b
602 41CHLOROPHYLL D
lig 167
CL7
b
603 60CHLOROPHYLL D
lig 168
CL7
b
604 65CHLOROPHYLL D
lig 169
CL7
b
605 65CHLOROPHYLL D
lig 170
CL7
b
606 65CHLOROPHYLL D
lig 171
CL7
b
607 55CHLOROPHYLL D
lig 172
CL7
b
608 60CHLOROPHYLL D
lig 173
CL7
b
609 65CHLOROPHYLL D
lig 174
CL7
b
610 65CHLOROPHYLL D
lig 175
CL7
b
611 65CHLOROPHYLL D
lig 176
CL7
b
612 65CHLOROPHYLL D
lig 177
CL7
b
613 65CHLOROPHYLL D
lig 178
CL7
b
614 55CHLOROPHYLL D
lig 179
CL7
b
615 60CHLOROPHYLL D
lig 180
CL7
b
616 50CHLOROPHYLL D
lig 181
CL7
b
617 45CHLOROPHYLL D
lig 182
8CT
b
618 40 DIHYDRO-BETA,BETA-CAROTENE
lig 183
8CT
b
619 40 DIHYDRO-BETA,BETA-CAROTENE
lig 184
8CT
b
620 40 DIHYDRO-BETA,BETA-CAROTENE
lig 185
SQD
b
621 54 GLUCOPYRANOSYL]-SN-GLYCEROL
lig 186
LMG
b
622 511,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 187
CL7
b
623 45CHLOROPHYLL D
lig 188
LHG
b
624 451,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 189
DGD
b
625 62DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 190
LHG
b
626 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 191
LMG
c
501 501,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 192
CL7
c
502 65CHLOROPHYLL D
lig 193
CL7
c
503 60CHLOROPHYLL D
lig 194
CL7
c
504 65CHLOROPHYLL D
lig 195
CL7
c
505 55CHLOROPHYLL D
lig 196
CL7
c
506 65CHLOROPHYLL D
lig 197
CL7
c
507 60CHLOROPHYLL D
lig 198
CL7
c
508 65CHLOROPHYLL D
lig 199
CL7
c
509 65CHLOROPHYLL D
lig 200
CL7
c
510 65CHLOROPHYLL D
lig 201
CL7
c
511 65CHLOROPHYLL D
lig 202
CL7
c
512 42CHLOROPHYLL D
lig 203
CL7
c
513 41CHLOROPHYLL D
lig 204
CL7
c
514 45CHLOROPHYLL D
lig 205
8CT
c
515 40 DIHYDRO-BETA,BETA-CAROTENE
lig 206
8CT
c
516 40 DIHYDRO-BETA,BETA-CAROTENE
lig 207
DGD
c
517 62DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 208
CL7
c
518 41CHLOROPHYLL D
lig 209
8CT
c
519 40 DIHYDRO-BETA,BETA-CAROTENE
lig 210
FE2
d
401 1FE (II) ION
lig 211
CL7
d
402 50CHLOROPHYLL D
lig 212
BCT
d
403 4BICARBONATE ION
lig 213
CL7
d
404 58CHLOROPHYLL D
lig 214
CL7
d
405 45CHLOROPHYLL D
lig 215
8CT
d
406 40 DIHYDRO-BETA,BETA-CAROTENE
lig 216
PL9
d
407 55 BENZOQUINONE
lig 217
PHO
d
408 64PHEOPHYTIN A
lig 218
LHG
d
409 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 219
LMG
d
410 331,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 220
HEM
f
101 43PROTOPORPHYRIN IX CONTAINING FE
lig 221
8CT
k
101 40 DIHYDRO-BETA,BETA-CAROTENE
lig 222
CL7
6
501 65CHLOROPHYLL D
lig 223
CL7
6
502 65CHLOROPHYLL D
lig 224
CL7
6
503 65CHLOROPHYLL D
lig 225
CL7
6
504 45CHLOROPHYLL D
lig 226
CL7
6
505 65CHLOROPHYLL D
lig 227
CL7
6
506 65CHLOROPHYLL D
lig 228
CL7
6
507 65CHLOROPHYLL D
lig 229
CL7
6
508 45CHLOROPHYLL D
lig 230
CL7
6
509 65CHLOROPHYLL D
lig 231
CL7
6
510 65CHLOROPHYLL D
lig 232
CL7
6
511 60CHLOROPHYLL D
lig 233
CL7
6
512 65CHLOROPHYLL D
lig 234
CL7
6
513 45CHLOROPHYLL D
lig 235
CL7
6
514 45CHLOROPHYLL D
lig 236
CL7
6
515 45CHLOROPHYLL D
lig 237
CL7
6
516 65CHLOROPHYLL D
lig 238
CL7
6
517 65CHLOROPHYLL D
lig 239
CL7
6
518 65CHLOROPHYLL D
lig 240
ZEX
6
519 42 YL}-2,5,5-TRIMETHYLCYCLOHEX-3-EN-1-OL
lig 241
ZEX
6
520 42 YL}-2,5,5-TRIMETHYLCYCLOHEX-3-EN-1-OL
lig 242
SQD
6
521 50 GLUCOPYRANOSYL]-SN-GLYCEROL
lig 243
ZEX
6
522 42 YL}-2,5,5-TRIMETHYLCYCLOHEX-3-EN-1-OL
lig 244
SQD
6
523 41 GLUCOPYRANOSYL]-SN-GLYCEROL
lig 245
ZEX
6
524 42 YL}-2,5,5-TRIMETHYLCYCLOHEX-3-EN-1-OL
lig 246
LMG
5
401 511,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 247
CL7
5
402 60CHLOROPHYLL D
lig 248
CL7
5
403 60CHLOROPHYLL D
lig 249
CL7
5
404 65CHLOROPHYLL D
lig 250
CL7
5
405 45CHLOROPHYLL D
lig 251
CL7
5
406 62CHLOROPHYLL D
lig 252
CL7
5
407 41CHLOROPHYLL D
lig 253
CL7
5
408 65CHLOROPHYLL D
lig 254
CL7
5
409 45CHLOROPHYLL D
lig 255
CL7
5
410 65CHLOROPHYLL D
lig 256
CL7
5
411 45CHLOROPHYLL D
lig 257
CL7
5
412 45CHLOROPHYLL D
lig 258
CL7
5
413 41CHLOROPHYLL D
lig 259
CL7
5
414 41CHLOROPHYLL D
lig 260
CL7
5
415 41CHLOROPHYLL D
lig 261
CL7
5
416 41CHLOROPHYLL D
lig 262
CL7
5
417 55CHLOROPHYLL D
lig 263
CL7
5
418 65CHLOROPHYLL D
lig 264
CL7
5
419 45CHLOROPHYLL D
lig 265
CL7
5
420 45CHLOROPHYLL D
lig 266
ZEX
5
421 42 YL}-2,5,5-TRIMETHYLCYCLOHEX-3-EN-1-OL
lig 267
ZEX
5
422 42 YL}-2,5,5-TRIMETHYLCYCLOHEX-3-EN-1-OL
lig 268
SQD
5
423 32 GLUCOPYRANOSYL]-SN-GLYCEROL
lig 269
CL7
7
501 65CHLOROPHYLL D
lig 270
CL7
7
502 58CHLOROPHYLL D
lig 271
CL7
7
503 65CHLOROPHYLL D
lig 272
CL7
7
504 65CHLOROPHYLL D
lig 273
CL7
7
505 65CHLOROPHYLL D
lig 274
CL7
7
506 45CHLOROPHYLL D
lig 275
CL7
7
507 65CHLOROPHYLL D
lig 276
CL7
7
508 65CHLOROPHYLL D
lig 277
CL7
7
509 65CHLOROPHYLL D
lig 278
CL7
7
510 65CHLOROPHYLL D
lig 279
CL7
7
511 65CHLOROPHYLL D
lig 280
CL7
7
512 55CHLOROPHYLL D
lig 281
CL7
7
513 45CHLOROPHYLL D
lig 282
CL7
7
514 45CHLOROPHYLL D
lig 283
CL7
7
515 41CHLOROPHYLL D
lig 284
CL7
7
516 55CHLOROPHYLL D
lig 285
CL7
7
517 50CHLOROPHYLL D
lig 286
CL7
7
518 45CHLOROPHYLL D
lig 287
ZEX
7
519 42 YL}-2,5,5-TRIMETHYLCYCLOHEX-3-EN-1-OL
lig 288
ZEX
7
520 42 YL}-2,5,5-TRIMETHYLCYCLOHEX-3-EN-1-OL
lig 289
SQD
7
521 46 GLUCOPYRANOSYL]-SN-GLYCEROL
lig 290
ZEX
7
522 42 YL}-2,5,5-TRIMETHYLCYCLOHEX-3-EN-1-OL
lig 291
SQD
7
523 50 GLUCOPYRANOSYL]-SN-GLYCEROL
lig 292
LHG
7
524 361,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 293
LHG
8
401 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 294
8CT
8
402 40 DIHYDRO-BETA,BETA-CAROTENE
lig 295
ZEX
8
403 42 YL}-2,5,5-TRIMETHYLCYCLOHEX-3-EN-1-OL
lig 296
CL7
8
404 65CHLOROPHYLL D
lig 297
CL7
8
405 65CHLOROPHYLL D
lig 298
CL7
8
406 65CHLOROPHYLL D
lig 299
CL7
8
407 41CHLOROPHYLL D
lig 300
CL7
8
408 45CHLOROPHYLL D
lig 301
CL7
8
409 60CHLOROPHYLL D
lig 302
CL7
8
410 45CHLOROPHYLL D
lig 303
CL7
8
411 65CHLOROPHYLL D
lig 304
CL7
8
412 65CHLOROPHYLL D
lig 305
CL7
8
413 60CHLOROPHYLL D
lig 306
CL7
8
414 53CHLOROPHYLL D
lig 307
CL7
8
415 45CHLOROPHYLL D
lig 308
CL7
8
416 41CHLOROPHYLL D
lig 309
CL7
8
417 42CHLOROPHYLL D
lig 310
ZEX
8
418 42 YL}-2,5,5-TRIMETHYLCYCLOHEX-3-EN-1-OL
lig 311
ZEX
8
419 42 YL}-2,5,5-TRIMETHYLCYCLOHEX-3-EN-1-OL
lig 312
ZEX
8
420 42 YL}-2,5,5-TRIMETHYLCYCLOHEX-3-EN-1-OL