Analysis of Ligand-Protein Contacts in PDB entry:
7AMK


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 62 ligands in PDB entry 7AMK. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
C
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
C
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
BMA
C
3 11BETA-D-MANNOPYRANOSE
lig 4
MAN
C
4 11ALPHA-D-MANNOPYRANOSE
lig 5
MAN
C
5 11ALPHA-D-MANNOPYRANOSE
lig 6
MAN
C
6 11ALPHA-D-MANNOPYRANOSE
lig 7
FUC
C
7 10ALPHA-L-FUCOPYRANOSE
lig 8
NAG
D
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
NAG
D
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 11
NAG
E
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
NAG
F
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 14
FUC
F
3 10ALPHA-L-FUCOPYRANOSE
lig 15
NAG
G
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 16
NAG
G
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 17
FUC
G
3 10ALPHA-L-FUCOPYRANOSE
lig 18
NAG
H
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 19
NAG
H
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 20
BMA
H
3 11BETA-D-MANNOPYRANOSE
lig 21
MAN
H
4 11ALPHA-D-MANNOPYRANOSE
lig 22
FUC
H
5 10ALPHA-L-FUCOPYRANOSE
lig 23
NAG
I
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 24
NAG
I
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 25
NAG
J
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 26
NAG
J
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 27
BMA
J
3 11BETA-D-MANNOPYRANOSE
lig 28
FUC
J
4 10ALPHA-L-FUCOPYRANOSE
lig 29
NAG
K
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 30
NAG
K
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 31
BMA
K
3 11BETA-D-MANNOPYRANOSE
lig 32
MAN
K
4 11ALPHA-D-MANNOPYRANOSE
lig 33
FUC
K
5 10ALPHA-L-FUCOPYRANOSE
lig 34
CA
A
601 1CALCIUM ION
lig 35
CA
A
602 1CALCIUM ION
lig 36
CA
A
603 1CALCIUM ION
lig 37
NAG
A
604 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 38
NAG
A
605 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 39
GOL
A
606 6GLYCEROL
lig 40
GOL
A
607 6GLYCEROL
lig 41
PGE
A
608 4TRIETHYLENE GLYCOL
lig 42
PEG
A
609 7DI(HYDROXYETHYL)ETHER
lig 43
PGE
A
610 10TRIETHYLENE GLYCOL
lig 44
PEG
A
611 7DI(HYDROXYETHYL)ETHER
lig 45
PEG
A
612 7DI(HYDROXYETHYL)ETHER
lig 46
PEG
A
613 7DI(HYDROXYETHYL)ETHER
lig 47
PGE
A
614 10TRIETHYLENE GLYCOL
lig 48
PEG
A
615 7DI(HYDROXYETHYL)ETHER
lig 49
PEG
A
616 7DI(HYDROXYETHYL)ETHER
lig 50
CA
B
601 1CALCIUM ION
lig 51
CA
B
602 1CALCIUM ION
lig 52
CA
B
603 1CALCIUM ION
lig 53
NAG
B
604 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 54
GOL
B
605 6GLYCEROL
lig 55
GOL
B
606 6GLYCEROL
lig 56
PEG
B
607 7DI(HYDROXYETHYL)ETHER
lig 57
PEG
B
608 7DI(HYDROXYETHYL)ETHER
lig 58
PGE
B
609 10TRIETHYLENE GLYCOL
lig 59
PGE
B
610 10TRIETHYLENE GLYCOL
lig 60
PEG
B
611 7DI(HYDROXYETHYL)ETHER
lig 61
PEG
B
612 7DI(HYDROXYETHYL)ETHER
lig 62
MES
B
613 122-(N-MORPHOLINO)-ETHANESULFONIC ACID