Analysis of Ligand-Protein Contacts in PDB entry:
7D1T

Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 204 ligands in PDB entry 7D1T. Click on ligand of interest for LPC analysis.

	HET ID	Chain ID	Residue N	Number of atoms	Ligand name
lig 1	HSK	D	336	11	3-HYDROXY-L-HISTIDINE
lig 2	FME	I	1	10	N-FORMYLMETHIONINE
lig 3	FME	M	1	10	N-FORMYLMETHIONINE
lig 4	FME	T	1	10	N-FORMYLMETHIONINE
lig 5	HSK	d	336	11	3-HYDROXY-L-HISTIDINE
lig 6	FME	i	1	10	N-FORMYLMETHIONINE
lig 7	FME	m	1	10	N-FORMYLMETHIONINE
lig 8	FME	t	1	10	N-FORMYLMETHIONINE
lig 9	OEX	A	401	10	CA-MN4-O5 CLUSTER
lig 10	FE2	A	402	1	FE (II) ION
lig 11	CL	A	403	1	CHLORIDE ION
lig 12	CL	A	404	1	CHLORIDE ION
lig 13	CLA	A	405	65	CHLOROPHYLL A
lig 14	CLA	A	406	65	CHLOROPHYLL A
lig 15	PHO	A	407	64	PHEOPHYTIN A
lig 16	CLA	A	408	65	CHLOROPHYLL A
lig 17	BCR	A	409	40	BETA-CAROTENE
lig 18	SQD	A	410	54	GLUCOPYRANOSYL]-SN-GLYCEROL
lig 19	PL9	A	411	55	BENZOQUINONE
lig 20	SQD	A	412	54	GLUCOPYRANOSYL]-SN-GLYCEROL
lig 21	UNL	A	413	36	UNKNOWN LIGAND
lig 22	UNL	A	414	23	UNKNOWN LIGAND
lig 23	CLA	B	601	65	CHLOROPHYLL A
lig 24	CLA	B	602	65	CHLOROPHYLL A
lig 25	CLA	B	603	65	CHLOROPHYLL A
lig 26	CLA	B	604	65	CHLOROPHYLL A
lig 27	CLA	B	605	65	CHLOROPHYLL A
lig 28	CLA	B	606	65	CHLOROPHYLL A
lig 29	CLA	B	607	65	CHLOROPHYLL A
lig 30	CLA	B	608	65	CHLOROPHYLL A
lig 31	CLA	B	609	65	CHLOROPHYLL A
lig 32	CLA	B	610	65	CHLOROPHYLL A
lig 33	CLA	B	611	65	CHLOROPHYLL A
lig 34	CLA	B	612	65	CHLOROPHYLL A
lig 35	CLA	B	613	65	CHLOROPHYLL A
lig 36	CLA	B	614	65	CHLOROPHYLL A
lig 37	CLA	B	615	65	CHLOROPHYLL A
lig 38	CLA	B	616	65	CHLOROPHYLL A
lig 39	BCR	B	617	40	BETA-CAROTENE
lig 40	BCR	B	618	40	BETA-CAROTENE
lig 41	BCR	B	619	40	BETA-CAROTENE
lig 42	SQD	B	620	54	GLUCOPYRANOSYL]-SN-GLYCEROL
lig 43	LMG	B	621	51	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 44	UNL	B	622	16	UNKNOWN LIGAND
lig 45	UNL	B	623	10	UNKNOWN LIGAND
lig 46	UNL	B	624	10	UNKNOWN LIGAND
lig 47	UNL	B	625	10	UNKNOWN LIGAND
lig 48	UNL	B	626	10	UNKNOWN LIGAND
lig 49	LMG	C	501	51	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 50	CLA	C	502	65	CHLOROPHYLL A
lig 51	CLA	C	503	65	CHLOROPHYLL A
lig 52	CLA	C	504	65	CHLOROPHYLL A
lig 53	CLA	C	505	65	CHLOROPHYLL A
lig 54	CLA	C	506	65	CHLOROPHYLL A
lig 55	CLA	C	507	65	CHLOROPHYLL A
lig 56	CLA	C	508	65	CHLOROPHYLL A
lig 57	CLA	C	509	65	CHLOROPHYLL A
lig 58	CLA	C	510	65	CHLOROPHYLL A
lig 59	CLA	C	511	65	CHLOROPHYLL A
lig 60	CLA	C	512	65	CHLOROPHYLL A
lig 61	CLA	C	513	65	CHLOROPHYLL A
lig 62	CLA	C	514	65	CHLOROPHYLL A
lig 63	BCR	C	515	40	BETA-CAROTENE
lig 64	BCR	C	516	40	BETA-CAROTENE
lig 65	DGD	C	517	62	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 66	DGD	C	518	62	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 67	DGD	C	519	62	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 68	LMG	C	520	51	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 69	LMT	C	521	35	DODECYL-BETA-D-MALTOSIDE
lig 70	BCR	C	522	40	BETA-CAROTENE
lig 71	LMG	C	523	51	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 72	UNL	C	524	10	UNKNOWN LIGAND
lig 73	CLA	D	401	65	CHLOROPHYLL A
lig 74	PHO	D	402	64	PHEOPHYTIN A
lig 75	BCT	D	403	4	BICARBONATE ION
lig 76	CLA	D	404	65	CHLOROPHYLL A
lig 77	CLA	D	405	65	CHLOROPHYLL A
lig 78	BCR	D	406	40	BETA-CAROTENE
lig 79	PL9	D	407	55	BENZOQUINONE
lig 80	LHG	D	408	49	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 81	LHG	D	409	49	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 82	LHG	D	410	46	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 83	LMG	D	411	51	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 84	UNL	D	412	40	UNKNOWN LIGAND
lig 85	UNL	D	413	16	UNKNOWN LIGAND
lig 86	LHG	E	101	49	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 87	UNL	E	102	10	UNKNOWN LIGAND
lig 88	HEM	E	103	43	PROTOPORPHYRIN IX CONTAINING FE
lig 89	SQD	F	101	45	GLUCOPYRANOSYL]-SN-GLYCEROL
lig 90	DGD	H	101	62	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 91	UNL	I	101	10	UNKNOWN LIGAND
lig 92	UNL	I	102	7	UNKNOWN LIGAND
lig 93	MG	J	101	1	MAGNESIUM ION
lig 94	LMT	J	102	24	DODECYL-BETA-D-MALTOSIDE
lig 95	UNL	J	103	10	UNKNOWN LIGAND
lig 96	BCR	J	104	40	BETA-CAROTENE
lig 97	UNL	K	101	34	UNKNOWN LIGAND
lig 98	LHG	L	101	49	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 99	SQD	L	102	54	GLUCOPYRANOSYL]-SN-GLYCEROL
lig 100	LMT	M	101	35	DODECYL-BETA-D-MALTOSIDE
lig 101	UNL	M	102	10	UNKNOWN LIGAND
lig 102	BCR	T	101	40	BETA-CAROTENE
lig 103	UNL	T	102	16	UNKNOWN LIGAND
lig 104	HEC	V	201	43	HEME C
lig 105	RRX	X	101	41	(3R)-BETA,BETA-CAROTEN-3-OL
lig 106	UNL	X	102	10	UNKNOWN LIGAND
lig 107	LMT	Z	101	35	DODECYL-BETA-D-MALTOSIDE
lig 108	OEX	a	401	10	CA-MN4-O5 CLUSTER
lig 109	FE2	a	402	1	FE (II) ION
lig 110	CL	a	403	1	CHLORIDE ION
lig 111	CL	a	404	1	CHLORIDE ION
lig 112	CLA	a	405	65	CHLOROPHYLL A
lig 113	CLA	a	406	65	CHLOROPHYLL A
lig 114	PHO	a	407	64	PHEOPHYTIN A
lig 115	CLA	a	408	65	CHLOROPHYLL A
lig 116	BCR	a	409	40	BETA-CAROTENE
lig 117	SQD	a	410	54	GLUCOPYRANOSYL]-SN-GLYCEROL
lig 118	PL9	a	411	55	BENZOQUINONE
lig 119	SQD	a	412	54	GLUCOPYRANOSYL]-SN-GLYCEROL
lig 120	UNL	a	413	36	UNKNOWN LIGAND
lig 121	UNL	a	414	23	UNKNOWN LIGAND
lig 122	UNL	b	601	10	UNKNOWN LIGAND
lig 123	UNL	b	602	10	UNKNOWN LIGAND
lig 124	CLA	b	603	65	CHLOROPHYLL A
lig 125	CLA	b	604	65	CHLOROPHYLL A
lig 126	CLA	b	605	65	CHLOROPHYLL A
lig 127	CLA	b	606	65	CHLOROPHYLL A
lig 128	CLA	b	607	65	CHLOROPHYLL A
lig 129	CLA	b	608	65	CHLOROPHYLL A
lig 130	CLA	b	609	65	CHLOROPHYLL A
lig 131	CLA	b	610	65	CHLOROPHYLL A
lig 132	CLA	b	611	65	CHLOROPHYLL A
lig 133	CLA	b	612	65	CHLOROPHYLL A
lig 134	CLA	b	613	65	CHLOROPHYLL A
lig 135	CLA	b	614	65	CHLOROPHYLL A
lig 136	CLA	b	615	65	CHLOROPHYLL A
lig 137	CLA	b	616	65	CHLOROPHYLL A
lig 138	CLA	b	617	65	CHLOROPHYLL A
lig 139	CLA	b	618	65	CHLOROPHYLL A
lig 140	BCR	b	619	40	BETA-CAROTENE
lig 141	BCR	b	620	40	BETA-CAROTENE
lig 142	BCR	b	621	40	BETA-CAROTENE
lig 143	LMG	b	622	51	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 144	UNL	b	623	16	UNKNOWN LIGAND
lig 145	UNL	b	624	10	UNKNOWN LIGAND
lig 146	UNL	b	625	10	UNKNOWN LIGAND
lig 147	LMG	c	501	51	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 148	CLA	c	502	65	CHLOROPHYLL A
lig 149	CLA	c	503	65	CHLOROPHYLL A
lig 150	CLA	c	504	65	CHLOROPHYLL A
lig 151	CLA	c	505	65	CHLOROPHYLL A
lig 152	CLA	c	506	65	CHLOROPHYLL A
lig 153	CLA	c	507	65	CHLOROPHYLL A
lig 154	CLA	c	508	65	CHLOROPHYLL A
lig 155	CLA	c	509	65	CHLOROPHYLL A
lig 156	CLA	c	510	65	CHLOROPHYLL A
lig 157	CLA	c	511	65	CHLOROPHYLL A
lig 158	CLA	c	512	65	CHLOROPHYLL A
lig 159	CLA	c	513	65	CHLOROPHYLL A
lig 160	CLA	c	514	65	CHLOROPHYLL A
lig 161	BCR	c	515	40	BETA-CAROTENE
lig 162	BCR	c	516	40	BETA-CAROTENE
lig 163	DGD	c	517	62	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 164	DGD	c	518	62	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 165	DGD	c	519	62	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 166	LMG	c	520	51	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 167	LMT	c	521	35	DODECYL-BETA-D-MALTOSIDE
lig 168	BCR	c	522	40	BETA-CAROTENE
lig 169	LMG	c	523	51	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 170	UNL	c	524	10	UNKNOWN LIGAND
lig 171	CLA	d	401	65	CHLOROPHYLL A
lig 172	PHO	d	402	64	PHEOPHYTIN A
lig 173	BCT	d	403	4	BICARBONATE ION
lig 174	CLA	d	404	65	CHLOROPHYLL A
lig 175	CLA	d	405	65	CHLOROPHYLL A
lig 176	BCR	d	406	40	BETA-CAROTENE
lig 177	PL9	d	407	55	BENZOQUINONE
lig 178	LHG	d	408	49	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 179	LHG	d	409	49	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 180	LHG	d	410	46	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 181	LMG	d	411	51	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 182	UNL	d	412	40	UNKNOWN LIGAND
lig 183	UNL	d	413	16	UNKNOWN LIGAND
lig 184	LHG	e	101	49	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 185	UNL	e	102	10	UNKNOWN LIGAND
lig 186	HEM	e	103	43	PROTOPORPHYRIN IX CONTAINING FE
lig 187	SQD	f	101	45	GLUCOPYRANOSYL]-SN-GLYCEROL
lig 188	DGD	h	101	62	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 189	UNL	i	101	10	UNKNOWN LIGAND
lig 190	UNL	i	102	7	UNKNOWN LIGAND
lig 191	MG	j	101	1	MAGNESIUM ION
lig 192	LMT	j	102	24	DODECYL-BETA-D-MALTOSIDE
lig 193	UNL	j	103	10	UNKNOWN LIGAND
lig 194	BCR	j	104	40	BETA-CAROTENE
lig 195	UNL	k	101	34	UNKNOWN LIGAND
lig 196	LHG	l	101	49	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 197	UNL	m	101	10	UNKNOWN LIGAND
lig 198	LMT	m	102	35	DODECYL-BETA-D-MALTOSIDE
lig 199	UNL	t	101	16	UNKNOWN LIGAND
lig 200	BCR	t	102	40	BETA-CAROTENE
lig 201	HEC	v	201	43	HEME C
lig 202	RRX	x	101	41	(3R)-BETA,BETA-CAROTEN-3-OL
lig 203	UNL	x	102	10	UNKNOWN LIGAND
lig 204	LMT	z	101	35	DODECYL-BETA-D-MALTOSIDE

Analysis of Ligand-Protein Contacts in PDB entry: 7D1T

Analysis of Ligand-Protein Contacts in PDB entry:
7D1T