Analysis of Ligand-Protein Contacts in PDB entry:
7D1U


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 204 ligands in PDB entry 7D1U. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
HSK
D
336 113-HYDROXY-L-HISTIDINE
lig 2
FME
I
1 10N-FORMYLMETHIONINE
lig 3
FME
M
1 10N-FORMYLMETHIONINE
lig 4
FME
T
1 10N-FORMYLMETHIONINE
lig 5
HSK
d
336 113-HYDROXY-L-HISTIDINE
lig 6
FME
i
1 10N-FORMYLMETHIONINE
lig 7
FME
m
1 10N-FORMYLMETHIONINE
lig 8
FME
t
1 10N-FORMYLMETHIONINE
lig 9
OEX
A
401 10CA-MN4-O5 CLUSTER
lig 10
FE2
A
402 1FE (II) ION
lig 11
CL
A
403 1CHLORIDE ION
lig 12
CL
A
404 1CHLORIDE ION
lig 13
CLA
A
405 65CHLOROPHYLL A
lig 14
CLA
A
406 65CHLOROPHYLL A
lig 15
PHO
A
407 64PHEOPHYTIN A
lig 16
CLA
A
408 65CHLOROPHYLL A
lig 17
BCR
A
409 40BETA-CAROTENE
lig 18
SQD
A
410 54 GLUCOPYRANOSYL]-SN-GLYCEROL
lig 19
PL9
A
411 55 BENZOQUINONE
lig 20
SQD
A
412 54 GLUCOPYRANOSYL]-SN-GLYCEROL
lig 21
UNL
A
413 36UNKNOWN LIGAND
lig 22
BCT
A
414 4BICARBONATE ION
lig 23
CLA
B
601 65CHLOROPHYLL A
lig 24
CLA
B
602 65CHLOROPHYLL A
lig 25
CLA
B
603 65CHLOROPHYLL A
lig 26
CLA
B
604 65CHLOROPHYLL A
lig 27
CLA
B
605 65CHLOROPHYLL A
lig 28
CLA
B
606 65CHLOROPHYLL A
lig 29
CLA
B
607 65CHLOROPHYLL A
lig 30
CLA
B
608 65CHLOROPHYLL A
lig 31
CLA
B
609 65CHLOROPHYLL A
lig 32
CLA
B
610 65CHLOROPHYLL A
lig 33
CLA
B
611 65CHLOROPHYLL A
lig 34
CLA
B
612 65CHLOROPHYLL A
lig 35
CLA
B
613 65CHLOROPHYLL A
lig 36
CLA
B
614 65CHLOROPHYLL A
lig 37
CLA
B
615 65CHLOROPHYLL A
lig 38
CLA
B
616 65CHLOROPHYLL A
lig 39
BCR
B
617 40BETA-CAROTENE
lig 40
BCR
B
618 40BETA-CAROTENE
lig 41
BCR
B
619 40BETA-CAROTENE
lig 42
LMG
B
620 511,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 43
UNL
B
621 16UNKNOWN LIGAND
lig 44
UNL
B
622 10UNKNOWN LIGAND
lig 45
UNL
B
623 10UNKNOWN LIGAND
lig 46
UNL
B
624 16UNKNOWN LIGAND
lig 47
LHG
B
625 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 48
UNL
B
626 23UNKNOWN LIGAND
lig 49
BCR
B
627 40BETA-CAROTENE
lig 50
UNL
B
628 10UNKNOWN LIGAND
lig 51
LMG
C
501 511,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 52
CLA
C
502 65CHLOROPHYLL A
lig 53
CLA
C
503 65CHLOROPHYLL A
lig 54
CLA
C
504 65CHLOROPHYLL A
lig 55
CLA
C
505 65CHLOROPHYLL A
lig 56
CLA
C
506 65CHLOROPHYLL A
lig 57
CLA
C
507 65CHLOROPHYLL A
lig 58
CLA
C
508 65CHLOROPHYLL A
lig 59
CLA
C
509 65CHLOROPHYLL A
lig 60
CLA
C
510 65CHLOROPHYLL A
lig 61
CLA
C
511 65CHLOROPHYLL A
lig 62
CLA
C
512 65CHLOROPHYLL A
lig 63
CLA
C
513 65CHLOROPHYLL A
lig 64
CLA
C
514 65CHLOROPHYLL A
lig 65
BCR
C
515 40BETA-CAROTENE
lig 66
BCR
C
516 40BETA-CAROTENE
lig 67
DGD
C
517 62DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 68
DGD
C
518 62DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 69
DGD
C
519 62DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 70
LMG
C
520 511,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 71
BCR
C
521 40BETA-CAROTENE
lig 72
LMG
C
522 511,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 73
UNL
C
523 10UNKNOWN LIGAND
lig 74
CLA
D
401 65CHLOROPHYLL A
lig 75
PHO
D
402 64PHEOPHYTIN A
lig 76
CLA
D
403 65CHLOROPHYLL A
lig 77
CLA
D
404 65CHLOROPHYLL A
lig 78
BCR
D
405 40BETA-CAROTENE
lig 79
PL9
D
406 55 BENZOQUINONE
lig 80
SQD
D
407 45 GLUCOPYRANOSYL]-SN-GLYCEROL
lig 81
LHG
D
408 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 82
LHG
D
409 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 83
LHG
D
410 461,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 84
LMG
D
411 511,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 85
UNL
D
412 40UNKNOWN LIGAND
lig 86
LHG
E
101 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 87
UNL
E
102 10UNKNOWN LIGAND
lig 88
HEM
E
103 43PROTOPORPHYRIN IX CONTAINING FE
lig 89
RRX
H
101 41(3R)-BETA,BETA-CAROTEN-3-OL
lig 90
DGD
H
102 62DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 91
UNL
I
101 10UNKNOWN LIGAND
lig 92
LMT
I
102 35DODECYL-BETA-D-MALTOSIDE
lig 93
UNL
I
103 7UNKNOWN LIGAND
lig 94
MG
J
101 1MAGNESIUM ION
lig 95
LMT
J
102 24DODECYL-BETA-D-MALTOSIDE
lig 96
UNL
J
103 10UNKNOWN LIGAND
lig 97
UNL
K
101 34UNKNOWN LIGAND
lig 98
SQD
L
101 54 GLUCOPYRANOSYL]-SN-GLYCEROL
lig 99
LMT
M
101 35DODECYL-BETA-D-MALTOSIDE
lig 100
UNL
M
102 10UNKNOWN LIGAND
lig 101
BCR
T
101 40BETA-CAROTENE
lig 102
UNL
T
102 10UNKNOWN LIGAND
lig 103
UNL
T
103 16UNKNOWN LIGAND
lig 104
HEC
V
201 43HEME C
lig 105
BCR
Y
101 40BETA-CAROTENE
lig 106
UNL
X
101 10UNKNOWN LIGAND
lig 107
LMT
Z
101 35DODECYL-BETA-D-MALTOSIDE
lig 108
OEX
a
401 10CA-MN4-O5 CLUSTER
lig 109
FE2
a
402 1FE (II) ION
lig 110
CL
a
403 1CHLORIDE ION
lig 111
CL
a
404 1CHLORIDE ION
lig 112
CLA
a
405 65CHLOROPHYLL A
lig 113
CLA
a
406 65CHLOROPHYLL A
lig 114
PHO
a
407 64PHEOPHYTIN A
lig 115
CLA
a
408 65CHLOROPHYLL A
lig 116
BCR
a
409 40BETA-CAROTENE
lig 117
SQD
a
410 54 GLUCOPYRANOSYL]-SN-GLYCEROL
lig 118
PL9
a
411 55 BENZOQUINONE
lig 119
SQD
a
412 54 GLUCOPYRANOSYL]-SN-GLYCEROL
lig 120
UNL
a
413 36UNKNOWN LIGAND
lig 121
BCT
a
414 4BICARBONATE ION
lig 122
UNL
b
601 23UNKNOWN LIGAND
lig 123
UNL
b
602 10UNKNOWN LIGAND
lig 124
CLA
b
603 65CHLOROPHYLL A
lig 125
CLA
b
604 65CHLOROPHYLL A
lig 126
CLA
b
605 65CHLOROPHYLL A
lig 127
CLA
b
606 65CHLOROPHYLL A
lig 128
CLA
b
607 65CHLOROPHYLL A
lig 129
CLA
b
608 65CHLOROPHYLL A
lig 130
CLA
b
609 65CHLOROPHYLL A
lig 131
CLA
b
610 65CHLOROPHYLL A
lig 132
CLA
b
611 65CHLOROPHYLL A
lig 133
CLA
b
612 65CHLOROPHYLL A
lig 134
CLA
b
613 65CHLOROPHYLL A
lig 135
CLA
b
614 65CHLOROPHYLL A
lig 136
CLA
b
615 65CHLOROPHYLL A
lig 137
CLA
b
616 65CHLOROPHYLL A
lig 138
CLA
b
617 65CHLOROPHYLL A
lig 139
CLA
b
618 65CHLOROPHYLL A
lig 140
BCR
b
619 40BETA-CAROTENE
lig 141
BCR
b
620 40BETA-CAROTENE
lig 142
BCR
b
621 40BETA-CAROTENE
lig 143
LMG
b
622 511,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 144
UNL
b
623 16UNKNOWN LIGAND
lig 145
UNL
b
624 10UNKNOWN LIGAND
lig 146
UNL
b
625 10UNKNOWN LIGAND
lig 147
UNL
b
626 16UNKNOWN LIGAND
lig 148
LHG
b
627 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 149
LMG
c
501 511,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 150
CLA
c
502 65CHLOROPHYLL A
lig 151
CLA
c
503 65CHLOROPHYLL A
lig 152
CLA
c
504 65CHLOROPHYLL A
lig 153
CLA
c
505 65CHLOROPHYLL A
lig 154
CLA
c
506 65CHLOROPHYLL A
lig 155
CLA
c
507 65CHLOROPHYLL A
lig 156
CLA
c
508 65CHLOROPHYLL A
lig 157
CLA
c
509 65CHLOROPHYLL A
lig 158
CLA
c
510 65CHLOROPHYLL A
lig 159
CLA
c
511 65CHLOROPHYLL A
lig 160
CLA
c
512 65CHLOROPHYLL A
lig 161
CLA
c
513 65CHLOROPHYLL A
lig 162
CLA
c
514 65CHLOROPHYLL A
lig 163
BCR
c
515 40BETA-CAROTENE
lig 164
BCR
c
516 40BETA-CAROTENE
lig 165
DGD
c
517 62DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 166
DGD
c
518 62DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 167
DGD
c
519 62DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 168
LMG
c
520 511,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 169
BCR
c
521 40BETA-CAROTENE
lig 170
LMG
c
522 511,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 171
UNL
c
523 10UNKNOWN LIGAND
lig 172
CLA
d
401 65CHLOROPHYLL A
lig 173
PHO
d
402 64PHEOPHYTIN A
lig 174
CLA
d
403 65CHLOROPHYLL A
lig 175
CLA
d
404 65CHLOROPHYLL A
lig 176
BCR
d
405 40BETA-CAROTENE
lig 177
PL9
d
406 55 BENZOQUINONE
lig 178
SQD
d
407 45 GLUCOPYRANOSYL]-SN-GLYCEROL
lig 179
LHG
d
408 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 180
LHG
d
409 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 181
LHG
d
410 461,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 182
LMG
d
411 511,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 183
UNL
d
412 40UNKNOWN LIGAND
lig 184
LHG
e
101 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 185
UNL
e
102 10UNKNOWN LIGAND
lig 186
HEM
e
103 43PROTOPORPHYRIN IX CONTAINING FE
lig 187
RRX
h
101 41(3R)-BETA,BETA-CAROTEN-3-OL
lig 188
DGD
h
102 62DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 189
UNL
i
101 10UNKNOWN LIGAND
lig 190
LMT
i
102 35DODECYL-BETA-D-MALTOSIDE
lig 191
UNL
i
103 7UNKNOWN LIGAND
lig 192
MG
j
101 1MAGNESIUM ION
lig 193
LMT
j
102 24DODECYL-BETA-D-MALTOSIDE
lig 194
UNL
j
103 10UNKNOWN LIGAND
lig 195
UNL
k
101 34UNKNOWN LIGAND
lig 196
SQD
l
101 54 GLUCOPYRANOSYL]-SN-GLYCEROL
lig 197
UNL
m
101 10UNKNOWN LIGAND
lig 198
LMT
m
102 35DODECYL-BETA-D-MALTOSIDE
lig 199
UNL
t
101 16UNKNOWN LIGAND
lig 200
UNL
t
102 10UNKNOWN LIGAND
lig 201
HEC
v
201 43HEME C
lig 202
BCR
y
101 40BETA-CAROTENE
lig 203
UNL
x
101 10UNKNOWN LIGAND
lig 204
LMT
z
101 35DODECYL-BETA-D-MALTOSIDE