Analysis of Ligand-Protein Contacts in PDB entry:
7D3F


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 46 ligands in PDB entry 7D3F. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
E
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
BMA
E
3 11BETA-D-MANNOPYRANOSE
lig 4
MAN
E
4 11ALPHA-D-MANNOPYRANOSE
lig 5
MAN
E
5 11ALPHA-D-MANNOPYRANOSE
lig 6
MAN
E
6 11ALPHA-D-MANNOPYRANOSE
lig 7
MAN
E
7 11ALPHA-D-MANNOPYRANOSE
lig 8
MAN
E
8 11ALPHA-D-MANNOPYRANOSE
lig 9
MAN
E
9 11ALPHA-D-MANNOPYRANOSE
lig 10
MAN
E
10 11ALPHA-D-MANNOPYRANOSE
lig 11
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
NAG
F
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
BMA
F
3 11BETA-D-MANNOPYRANOSE
lig 14
MAN
F
4 11ALPHA-D-MANNOPYRANOSE
lig 15
MAN
F
5 11ALPHA-D-MANNOPYRANOSE
lig 16
MAN
F
6 11ALPHA-D-MANNOPYRANOSE
lig 17
MAN
F
7 11ALPHA-D-MANNOPYRANOSE
lig 18
MAN
F
8 11ALPHA-D-MANNOPYRANOSE
lig 19
MAN
F
9 11ALPHA-D-MANNOPYRANOSE
lig 20
MAN
F
10 11ALPHA-D-MANNOPYRANOSE
lig 21
HEM
A
1601 43PROTOPORPHYRIN IX CONTAINING FE
lig 22
HEM
A
1602 43PROTOPORPHYRIN IX CONTAINING FE
lig 23
NDP
A
1603 48 PHOSPHATE
lig 24
FAD
A
1604 53FLAVIN-ADENINE DINUCLEOTIDE
lig 25
CA
A
1605 1CALCIUM ION
lig 26
CA
A
1606 1CALCIUM ION
lig 27
NAG
A
1607 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 28
NAG
A
1608 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 29
NAG
A
1609 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 30
NA
A
1610 1SODIUM ION
lig 31
NA
A
1611 1SODIUM ION
lig 32
NAG
B
501 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 33
NAG
B
502 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 34
HEM
C
1601 43PROTOPORPHYRIN IX CONTAINING FE
lig 35
HEM
C
1602 43PROTOPORPHYRIN IX CONTAINING FE
lig 36
NDP
C
1603 48 PHOSPHATE
lig 37
FAD
C
1604 53FLAVIN-ADENINE DINUCLEOTIDE
lig 38
CA
C
1605 1CALCIUM ION
lig 39
CA
C
1606 1CALCIUM ION
lig 40
NAG
C
1607 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 41
NAG
C
1608 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 42
NAG
C
1609 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 43
NA
C
1610 1SODIUM ION
lig 44
NA
C
1611 1SODIUM ION
lig 45
NAG
D
501 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 46
NAG
D
502 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE