Analysis of Ligand-Protein Contacts in PDB entry:
7DVQ


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 19 ligands in PDB entry 7DVQ. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
SEP
1
129 10PHOSPHOSERINE
lig 2
TPO
3
613 11PHOSPHOTHREONINE
lig 3
IHP
A
3000 36INOSITOL HEXAKISPHOSPHATE
lig 4
GTP
C
1500 32GUANOSINE-5'-TRIPHOSPHATE
lig 5
MG
C
1501 1MAGNESIUM ION
lig 6
MG
F
201 1MAGNESIUM ION
lig 7
MG
F
202 1MAGNESIUM ION
lig 8
MG
F
203 1MAGNESIUM ION
lig 9
MG
F
204 1MAGNESIUM ION
lig 10
K
F
205 1POTASSIUM ION
lig 11
K
F
206 1POTASSIUM ION
lig 12
G5J
F
207 33 PHOSPHORYL]OXY}PHOSPHORYL]OXY}PHOSPHORYL]
lig 13
ZN
v
300 1ZINC ION
lig 14
ZN
6
201 1ZINC ION
lig 15
ZN
6
202 1ZINC ION
lig 16
ZN
6
203 1ZINC ION
lig 17
ZN
M
500 1ZINC ION
lig 18
ZN
0
200 1ZINC ION
lig 19
ZN
0
201 1ZINC ION