Analysis of Ligand-Protein Contacts in PDB entry:
7DY1


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 35 ligands in PDB entry 7DY1. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
SEP
A
431 10PHOSPHOSERINE
lig 2
SEP
B
431 10PHOSPHOSERINE
lig 3
TPO
B
432 11PHOSPHOTHREONINE
lig 4
SEP
C
431 10PHOSPHOSERINE
lig 5
TPO
C
432 11PHOSPHOTHREONINE
lig 6
SEP
D
431 10PHOSPHOSERINE
lig 7
TPO
D
432 11PHOSPHOTHREONINE
lig 8
SEP
E
431 10PHOSPHOSERINE
lig 9
TPO
E
432 11PHOSPHOTHREONINE
lig 10
SEP
F
431 10PHOSPHOSERINE
lig 11
TPO
F
432 11PHOSPHOTHREONINE
lig 12
ATP
A
601 31ADENOSINE-5'-TRIPHOSPHATE
lig 13
ATP
A
602 31ADENOSINE-5'-TRIPHOSPHATE
lig 14
MG
A
603 1MAGNESIUM ION
lig 15
MG
A
604 1MAGNESIUM ION
lig 16
ATP
B
601 31ADENOSINE-5'-TRIPHOSPHATE
lig 17
ATP
B
602 31ADENOSINE-5'-TRIPHOSPHATE
lig 18
MG
B
603 1MAGNESIUM ION
lig 19
MG
B
604 1MAGNESIUM ION
lig 20
ATP
C
601 31ADENOSINE-5'-TRIPHOSPHATE
lig 21
ATP
C
602 31ADENOSINE-5'-TRIPHOSPHATE
lig 22
MG
C
603 1MAGNESIUM ION
lig 23
MG
C
604 1MAGNESIUM ION
lig 24
ATP
D
601 31ADENOSINE-5'-TRIPHOSPHATE
lig 25
ATP
D
602 31ADENOSINE-5'-TRIPHOSPHATE
lig 26
MG
D
603 1MAGNESIUM ION
lig 27
MG
D
604 1MAGNESIUM ION
lig 28
ATP
E
601 31ADENOSINE-5'-TRIPHOSPHATE
lig 29
ATP
E
602 31ADENOSINE-5'-TRIPHOSPHATE
lig 30
MG
E
603 1MAGNESIUM ION
lig 31
MG
E
604 1MAGNESIUM ION
lig 32
ATP
F
601 31ADENOSINE-5'-TRIPHOSPHATE
lig 33
ATP
F
602 31ADENOSINE-5'-TRIPHOSPHATE
lig 34
MG
F
603 1MAGNESIUM ION
lig 35
MG
F
604 1MAGNESIUM ION