Analysis of Ligand-Protein Contacts in PDB entry:
7R42


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 69 ligands in PDB entry 7R42. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
FME
A
1 10N-FORMYLMETHIONINE
lig 2
2MR
D
85 13N3, N4-DIMETHYLARGININE
lig 3
FME
H
1 10N-FORMYLMETHIONINE
lig 4
FME
J
1 10N-FORMYLMETHIONINE
lig 5
FME
K
1 10N-FORMYLMETHIONINE
lig 6
FME
L
1 10N-FORMYLMETHIONINE
lig 7
FME
M
1 10N-FORMYLMETHIONINE
lig 8
FME
N
1 10N-FORMYLMETHIONINE
lig 9
AYA
Y
1 8N-ACETYLALANINE
lig 10
SAC
i
1 9N-ACETYL-SERINE
lig 11
AYA
r
1 8N-ACETYLALANINE
lig 12
LMT
A
301 35DODECYL-BETA-D-MALTOSIDE
lig 13
LMT
A
302 35DODECYL-BETA-D-MALTOSIDE
lig 14
PC1
A
303 211,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 15
SF4
B
201 8IRON/SULFUR CLUSTER
lig 16
PC1
B
202 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 17
PC1
B
203 351,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 18
FES
E
301 4FE2/S2 (INORGANIC) CLUSTER
lig 19
FMN
F
501 31FLAVIN MONONUCLEOTIDE
lig 20
SF4
F
502 8IRON/SULFUR CLUSTER
lig 21
SF4
G
801 8IRON/SULFUR CLUSTER
lig 22
SF4
G
802 8IRON/SULFUR CLUSTER
lig 23
FES
G
803 4FE2/S2 (INORGANIC) CLUSTER
lig 24
K
G
804 1POTASSIUM ION
lig 25
3PE
H
401 441,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 26
3PE
H
402 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 27
3PE
H
403 341,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 28
SF4
I
201 8IRON/SULFUR CLUSTER
lig 29
SF4
I
202 8IRON/SULFUR CLUSTER
lig 30
CDL
J
701 62CARDIOLIPIN
lig 31
LMT
J
702 35DODECYL-BETA-D-MALTOSIDE
lig 32
LMT
K
501 35DODECYL-BETA-D-MALTOSIDE
lig 33
CDL
K
502 71CARDIOLIPIN
lig 34
3PE
L
701 491,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 35
LMT
L
702 35DODECYL-BETA-D-MALTOSIDE
lig 36
CDL
L
703 69CARDIOLIPIN
lig 37
LMT
L
704 35DODECYL-BETA-D-MALTOSIDE
lig 38
3PE
L
705 451,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 39
LMT
L
706 35DODECYL-BETA-D-MALTOSIDE
lig 40
PC1
L
707 491,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 41
3PE
M
601 461,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 42
LMT
M
602 35DODECYL-BETA-D-MALTOSIDE
lig 43
LMT
M
603 35DODECYL-BETA-D-MALTOSIDE
lig 44
LMT
M
604 35DODECYL-BETA-D-MALTOSIDE
lig 45
3PE
M
605 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 46
3PE
N
701 411,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 47
3PE
N
702 291,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 48
I49
N
703 17 ETHYL]GUANIDINE
lig 49
GTP
O
401 32GUANOSINE-5'-TRIPHOSPHATE
lig 50
MG
O
402 1MAGNESIUM ION
lig 51
NDP
P
501 48 PHOSPHATE
lig 52
3PE
P
502 371,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 53
ZN
R
201 1ZINC ION
lig 54
EHZ
T
101 37 (3~{S})-3-OXIDANYLTETRADECANETHIOATE
lig 55
EHZ
U
101 37 (3~{S})-3-OXIDANYLTETRADECANETHIOATE
lig 56
3PE
X
401 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 57
LMT
Y
801 35DODECYL-BETA-D-MALTOSIDE
lig 58
3PE
Y
802 351,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 59
LMT
Y
803 35DODECYL-BETA-D-MALTOSIDE
lig 60
LMT
Y
804 35DODECYL-BETA-D-MALTOSIDE
lig 61
LMT
b
101 35DODECYL-BETA-D-MALTOSIDE
lig 62
3PE
d
1201 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 63
3PE
d
1202 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 64
CDL
h
1001 67CARDIOLIPIN
lig 65
LMT
h
1002 35DODECYL-BETA-D-MALTOSIDE
lig 66
LMT
j
101 35DODECYL-BETA-D-MALTOSIDE
lig 67
LMT
l
201 35DODECYL-BETA-D-MALTOSIDE
lig 68
MYR
o
201 15MYRISTIC ACID
lig 69
CDL
r
201 76CARDIOLIPIN