Analysis of Ligand-Protein Contacts in PDB entry:
7R4D


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 60 ligands in PDB entry 7R4D. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
FME
A
1 10N-FORMYLMETHIONINE
lig 2
2MR
D
85 13N3, N4-DIMETHYLARGININE
lig 3
FME
H
1 10N-FORMYLMETHIONINE
lig 4
FME
J
1 10N-FORMYLMETHIONINE
lig 5
FME
K
1 10N-FORMYLMETHIONINE
lig 6
FME
L
1 10N-FORMYLMETHIONINE
lig 7
FME
M
1 10N-FORMYLMETHIONINE
lig 8
FME
N
1 10N-FORMYLMETHIONINE
lig 9
AYA
Y
1 8N-ACETYLALANINE
lig 10
SAC
i
1 9N-ACETYL-SERINE
lig 11
AYA
r
1 8N-ACETYLALANINE
lig 12
LMT
A
301 35DODECYL-BETA-D-MALTOSIDE
lig 13
3PE
A
302 421,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 14
SF4
B
201 8IRON/SULFUR CLUSTER
lig 15
PC1
B
202 351,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 16
FES
E
301 4FE2/S2 (INORGANIC) CLUSTER
lig 17
FMN
F
501 31FLAVIN MONONUCLEOTIDE
lig 18
SF4
F
502 8IRON/SULFUR CLUSTER
lig 19
SF4
G
801 8IRON/SULFUR CLUSTER
lig 20
SF4
G
802 8IRON/SULFUR CLUSTER
lig 21
FES
G
803 4FE2/S2 (INORGANIC) CLUSTER
lig 22
K
G
804 1POTASSIUM ION
lig 23
LMT
H
401 35DODECYL-BETA-D-MALTOSIDE
lig 24
3PE
H
402 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 25
3PE
H
403 341,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 26
SF4
I
201 8IRON/SULFUR CLUSTER
lig 27
SF4
I
202 8IRON/SULFUR CLUSTER
lig 28
LMT
J
201 35DODECYL-BETA-D-MALTOSIDE
lig 29
3PE
L
701 491,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 30
LMT
L
702 35DODECYL-BETA-D-MALTOSIDE
lig 31
CDL
L
703 69CARDIOLIPIN
lig 32
3PE
L
704 451,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 33
LMT
L
705 35DODECYL-BETA-D-MALTOSIDE
lig 34
3PE
M
1301 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 35
PC1
M
1302 491,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 36
LMT
M
1303 35DODECYL-BETA-D-MALTOSIDE
lig 37
LMT
N
501 35DODECYL-BETA-D-MALTOSIDE
lig 38
3PE
N
502 411,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 39
I49
N
503 17 ETHYL]GUANIDINE
lig 40
3PE
O
1201 471,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 41
GTP
O
1202 32GUANOSINE-5'-TRIPHOSPHATE
lig 42
MG
O
1203 1MAGNESIUM ION
lig 43
NDP
P
501 48 PHOSPHATE
lig 44
ZN
R
201 1ZINC ION
lig 45
EHZ
T
101 37 (3~{S})-3-OXIDANYLTETRADECANETHIOATE
lig 46
EHZ
U
101 37 (3~{S})-3-OXIDANYLTETRADECANETHIOATE
lig 47
CDL
X
1701 68CARDIOLIPIN
lig 48
3PE
Y
601 401,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 49
LMT
Y
602 35DODECYL-BETA-D-MALTOSIDE
lig 50
3PE
Y
603 351,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 51
3PE
Y
604 291,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 52
CDL
d
201 65CARDIOLIPIN
lig 53
LMT
f
1901 35DODECYL-BETA-D-MALTOSIDE
lig 54
CDL
h
1001 67CARDIOLIPIN
lig 55
LMT
h
1002 35DODECYL-BETA-D-MALTOSIDE
lig 56
LMT
h
1003 35DODECYL-BETA-D-MALTOSIDE
lig 57
LMT
j
101 35DODECYL-BETA-D-MALTOSIDE
lig 58
LMT
l
201 35DODECYL-BETA-D-MALTOSIDE
lig 59
MYR
o
201 15MYRISTIC ACID
lig 60
CDL
r
201 76CARDIOLIPIN