Analysis of Ligand-Protein Contacts in PDB entry:
7TII


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 70 ligands in PDB entry 7TII. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
FME
A
1 10N-FORMYLMETHIONINE
lig 2
FME
B
1 10N-FORMYLMETHIONINE
lig 3
TPO
G
11 11PHOSPHOTHREONINE
lig 4
FME
N
1 10N-FORMYLMETHIONINE
lig 5
FME
O
1 10N-FORMYLMETHIONINE
lig 6
TPO
T
11 11PHOSPHOTHREONINE
lig 7
HEA
A
601 60HEME-A
lig 8
HEA
A
602 60HEME-A
lig 9
CU
A
603 1COPPER (II) ION
lig 10
MG
A
604 1MAGNESIUM ION
lig 11
NA
A
605 1SODIUM ION
lig 12
PGV
A
606 51 OCTADEC-11-ENOATE
lig 13
PGV
A
607 51 OCTADEC-11-ENOATE
lig 14
EDO
A
608 41,2-ETHANEDIOL
lig 15
EDO
A
609 41,2-ETHANEDIOL
lig 16
OH
A
610 1HYDROXIDE ION
lig 17
TGL
B
301 63TRISTEAROYLGLYCEROL
lig 18
CUA
B
302 2DINUCLEAR COPPER ION
lig 19
DMU
C
301 33DECYL-BETA-D-MALTOPYRANOSIDE
lig 20
PEK
C
302 53 11,14-TETRAENOATE
lig 21
PGV
C
303 51 OCTADEC-11-ENOATE
lig 22
CDL
C
304 100CARDIOLIPIN
lig 23
CHD
C
305 29CHOLIC ACID
lig 24
CHD
C
306 29CHOLIC ACID
lig 25
PEK
C
307 53 11,14-TETRAENOATE
lig 26
PGV
C
308 51 OCTADEC-11-ENOATE
lig 27
EDO
C
309 41,2-ETHANEDIOL
lig 28
TGL
D
201 63TRISTEAROYLGLYCEROL
lig 29
DMU
D
202 33DECYL-BETA-D-MALTOPYRANOSIDE
lig 30
PSC
E
201 52 17,20-DIEN-1-AMINIUM 4-OXIDE
lig 31
ZN
F
101 1ZINC ION
lig 32
CDL
G
101 100CARDIOLIPIN
lig 33
PEK
G
102 53 11,14-TETRAENOATE
lig 34
CHD
G
103 29CHOLIC ACID
lig 35
EDO
G
104 41,2-ETHANEDIOL
lig 36
SAC
I
101 9N-ACETYL-SERINE
lig 37
CHD
J
101 29CHOLIC ACID
lig 38
TGL
L
101 63TRISTEAROYLGLYCEROL
lig 39
HEA
N
601 60HEME-A
lig 40
HEA
N
602 60HEME-A
lig 41
CU
N
603 1COPPER (II) ION
lig 42
MG
N
604 1MAGNESIUM ION
lig 43
NA
N
605 1SODIUM ION
lig 44
TGL
N
606 63TRISTEAROYLGLYCEROL
lig 45
EDO
N
607 41,2-ETHANEDIOL
lig 46
OH
N
608 1HYDROXIDE ION
lig 47
CUA
O
301 2DINUCLEAR COPPER ION
lig 48
PSC
O
302 52 17,20-DIEN-1-AMINIUM 4-OXIDE
lig 49
PGV
P
301 51 OCTADEC-11-ENOATE
lig 50
PGV
P
302 51 OCTADEC-11-ENOATE
lig 51
PGV
P
303 51 OCTADEC-11-ENOATE
lig 52
CDL
P
304 100CARDIOLIPIN
lig 53
CHD
P
305 29CHOLIC ACID
lig 54
CHD
P
306 29CHOLIC ACID
lig 55
TGL
Q
201 63TRISTEAROYLGLYCEROL
lig 56
ZN
S
101 1ZINC ION
lig 57
EDO
S
102 41,2-ETHANEDIOL
lig 58
EDO
S
103 41,2-ETHANEDIOL
lig 59
CHD
T
101 29CHOLIC ACID
lig 60
PEK
T
102 53 11,14-TETRAENOATE
lig 61
PEK
T
103 53 11,14-TETRAENOATE
lig 62
PEK
T
104 53 11,14-TETRAENOATE
lig 63
CDL
T
105 100CARDIOLIPIN
lig 64
EDO
T
106 41,2-ETHANEDIOL
lig 65
SAC
V
101 9N-ACETYL-SERINE
lig 66
DMU
W
101 33DECYL-BETA-D-MALTOPYRANOSIDE
lig 67
CHD
W
102 29CHOLIC ACID
lig 68
TGL
Y
101 63TRISTEAROYLGLYCEROL
lig 69
PGV
Z
101 51 OCTADEC-11-ENOATE
lig 70
DMU
Z
102 33DECYL-BETA-D-MALTOPYRANOSIDE