Analysis of Ligand-Protein Contacts in PDB entry:
7W4D


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 46 ligands in PDB entry 7W4D. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
2MR
Q
118 13N3, N4-DIMETHYLARGININE
lig 2
SF4
A
501 8IRON/SULFUR CLUSTER
lig 3
FMN
A
502 31FLAVIN MONONUCLEOTIDE
lig 4
NAI
A
503 441,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTI
lig 5
SF4
B
301 8IRON/SULFUR CLUSTER
lig 6
SF4
B
302 8IRON/SULFUR CLUSTER
lig 7
SF4
C
301 8IRON/SULFUR CLUSTER
lig 8
PLX
C
302 52 PHOSPHAOCTACOSANE-6,6,11-TRIOL
lig 9
8Q1
G
201 35 BUTANOYL]-BETA-ALANYL}AMINO)ETHYL] DODECA
lig 10
CDL
I
201 51CARDIOLIPIN
lig 11
NDP
J
401 48 PHOSPHATE
lig 12
UQ
J
402 33COENZYME Q10, (2Z,6E,10Z,14E,18E,22E,26Z)-
lig 13
SF4
M
801 8IRON/SULFUR CLUSTER
lig 14
SF4
M
802 8IRON/SULFUR CLUSTER
lig 15
FES
M
803 4FE2/S2 (INORGANIC) CLUSTER
lig 16
MG
M
804 1MAGNESIUM ION
lig 17
FES
O
301 4FE2/S2 (INORGANIC) CLUSTER
lig 18
UQ1
Q
501 18UBIQUINONE-1
lig 19
ZN
T
201 1ZINC ION
lig 20
CDL
V
201 94CARDIOLIPIN
lig 21
CDL
V
202 100CARDIOLIPIN
lig 22
PEE
W
201 411,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOETHANOLAM
lig 23
8Q1
X
201 35 BUTANOYL]-BETA-ALANYL}AMINO)ETHYL] DODECA
lig 24
PLX
a
201 52 PHOSPHAOCTACOSANE-6,6,11-TRIOL
lig 25
CDL
b
201 100CARDIOLIPIN
lig 26
PLX
g
201 52 PHOSPHAOCTACOSANE-6,6,11-TRIOL
lig 27
PEE
i
401 471,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOETHANOLAM
lig 28
PEE
j
201 471,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOETHANOLAM
lig 29
PEE
j
202 511,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOETHANOLAM
lig 30
PEE
j
203 411,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOETHANOLAM
lig 31
PLX
j
204 52 PHOSPHAOCTACOSANE-6,6,11-TRIOL
lig 32
PLX
j
205 52 PHOSPHAOCTACOSANE-6,6,11-TRIOL
lig 33
CDL
k
101 94CARDIOLIPIN
lig 34
PEE
l
701 401,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOETHANOLAM
lig 35
CDL
l
702 99CARDIOLIPIN
lig 36
CDL
l
703 100CARDIOLIPIN
lig 37
PEE
l
704 511,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOETHANOLAM
lig 38
PEE
l
705 461,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOETHANOLAM
lig 39
CDL
n
101 55CARDIOLIPIN
lig 40
PEE
r
501 511,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOETHANOLAM
lig 41
PLX
r
502 52 PHOSPHAOCTACOSANE-6,6,11-TRIOL
lig 42
PLX
r
503 52 PHOSPHAOCTACOSANE-6,6,11-TRIOL
lig 43
CDL
r
504 100CARDIOLIPIN
lig 44
CDL
s
401 89CARDIOLIPIN
lig 45
UQ
s
402 38COENZYME Q10, (2Z,6E,10Z,14E,18E,22E,26Z)-
lig 46
ADP
w
401 27ADENOSINE-5'-DIPHOSPHATE