Analysis of Ligand-Protein Contacts in PDB entry:
7ZD6


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 45 ligands in PDB entry 7ZD6. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
FME
K
1 10N-FORMYLMETHIONINE
lig 2
FME
L
1 10N-FORMYLMETHIONINE
lig 3
FME
M
1 10N-FORMYLMETHIONINE
lig 4
AYA
V
1 8N-ACETYLALANINE
lig 5
SEP
k
36 10PHOSPHOSERINE
lig 6
2MR
4
85 13N3, N4-DIMETHYLARGININE
lig 7
AYA
h
1 8N-ACETYLALANINE
lig 8
PC1
A
201 371,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 9
3PE
A
202 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 10
PC1
A
203 461,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 11
DCQ
H
501 23 DIONE
lig 12
3PE
H
502 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 13
PC1
H
503 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 14
3PE
H
504 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 15
3PE
K
101 401,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 16
3PE
L
1001 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 17
PC1
L
1002 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 18
PC1
L
1003 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 19
3PE
L
1004 311,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 20
3PE
M
501 441,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 21
PC1
M
502 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 22
3PE
N
401 401,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 23
3PE
N
402 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 24
3PE
N
403 311,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 25
3PE
V
201 351,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 26
3PE
V
202 371,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 27
3PE
V
203 271,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 28
ZMP
X
101 31 BUTANOYL]-BETA-ALANYL}AMINO)ETHYL] TETRAD
lig 29
AMP
k
501 23ADENOSINE MONOPHOSPHATE
lig 30
MYR
s
201 15MYRISTIC ACID
lig 31
SF4
1
501 8IRON/SULFUR CLUSTER
lig 32
FMN
1
502 31FLAVIN MONONUCLEOTIDE
lig 33
NAI
1
503 441,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTI
lig 34
FES
2
300 4FE2/S2 (INORGANIC) CLUSTER
lig 35
SF4
3
801 8IRON/SULFUR CLUSTER
lig 36
SF4
3
802 8IRON/SULFUR CLUSTER
lig 37
FES
3
803 4FE2/S2 (INORGANIC) CLUSTER
lig 38
K
3
804 1POTASSIUM ION
lig 39
SF4
6
201 8IRON/SULFUR CLUSTER
lig 40
3PE
6
202 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 41
SF4
9
201 8IRON/SULFUR CLUSTER
lig 42
SF4
9
202 8IRON/SULFUR CLUSTER
lig 43
ZN
b
300 1ZINC ION
lig 44
NDP
d
401 48 PHOSPHATE
lig 45
ZMP
j
101 34 BUTANOYL]-BETA-ALANYL}AMINO)ETHYL] TETRAD