Analysis of Ligand-Protein Contacts in PDB entry:
7ZDH


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 42 ligands in PDB entry 7ZDH. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
FME
K
1 10N-FORMYLMETHIONINE
lig 2
FME
L
1 10N-FORMYLMETHIONINE
lig 3
FME
M
1 10N-FORMYLMETHIONINE
lig 4
AYA
V
1 8N-ACETYLALANINE
lig 5
SEP
k
36 10PHOSPHOSERINE
lig 6
2MR
4
85 13N3, N4-DIMETHYLARGININE
lig 7
AYA
h
1 8N-ACETYLALANINE
lig 8
3PE
A
201 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 9
PC1
H
401 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 10
3PE
J
201 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 11
3PE
J
202 401,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 12
3PE
L
1001 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 13
3PE
L
1002 311,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 14
PC1
L
1003 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 15
PC1
L
1004 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 16
3PE
M
501 441,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 17
PC1
M
502 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 18
3PE
N
401 401,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 19
3PE
N
402 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 20
3PE
V
400 371,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 21
ZMP
X
101 31 BUTANOYL]-BETA-ALANYL}AMINO)ETHYL] TETRAD
lig 22
AMP
k
501 23ADENOSINE MONOPHOSPHATE
lig 23
3PE
o
501 311,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 24
3PE
p
201 271,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 25
MYR
s
201 15MYRISTIC ACID
lig 26
SF4
1
501 8IRON/SULFUR CLUSTER
lig 27
FMN
1
502 31FLAVIN MONONUCLEOTIDE
lig 28
NAI
1
503 441,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTI
lig 29
FES
2
300 4FE2/S2 (INORGANIC) CLUSTER
lig 30
SF4
3
801 8IRON/SULFUR CLUSTER
lig 31
SF4
3
802 8IRON/SULFUR CLUSTER
lig 32
FES
3
803 4FE2/S2 (INORGANIC) CLUSTER
lig 33
K
3
804 1POTASSIUM ION
lig 34
SF4
6
201 8IRON/SULFUR CLUSTER
lig 35
PC1
6
202 461,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 36
3PE
6
203 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 37
SF4
9
201 8IRON/SULFUR CLUSTER
lig 38
SF4
9
202 8IRON/SULFUR CLUSTER
lig 39
ZN
b
300 1ZINC ION
lig 40
NDP
d
401 48 PHOSPHATE
lig 41
3PE
i
201 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 42
ZMP
j
101 34 BUTANOYL]-BETA-ALANYL}AMINO)ETHYL] TETRAD