Analysis of Ligand-Protein Contacts in PDB entry:
7ZDJ


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 23 ligands in PDB entry 7ZDJ. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
2MR
4
85 13N3, N4-DIMETHYLARGININE
lig 2
FME
K
1 10N-FORMYLMETHIONINE
lig 3
FME
L
1 10N-FORMYLMETHIONINE
lig 4
FME
M
1 10N-FORMYLMETHIONINE
lig 5
AYA
V
1 8N-ACETYLALANINE
lig 6
SEP
k
36 10PHOSPHOSERINE
lig 7
AYA
h
1 8N-ACETYLALANINE
lig 8
ZMP
X
101 31 BUTANOYL]-BETA-ALANYL}AMINO)ETHYL] TETRAD
lig 9
MYR
s
201 15MYRISTIC ACID
lig 10
SF4
1
501 8IRON/SULFUR CLUSTER
lig 11
FMN
1
502 31FLAVIN MONONUCLEOTIDE
lig 12
NAI
1
503 441,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTI
lig 13
FES
2
300 4FE2/S2 (INORGANIC) CLUSTER
lig 14
SF4
3
801 8IRON/SULFUR CLUSTER
lig 15
SF4
3
802 8IRON/SULFUR CLUSTER
lig 16
FES
3
803 4FE2/S2 (INORGANIC) CLUSTER
lig 17
K
3
804 1POTASSIUM ION
lig 18
SF4
6
300 8IRON/SULFUR CLUSTER
lig 19
SF4
9
201 8IRON/SULFUR CLUSTER
lig 20
SF4
9
202 8IRON/SULFUR CLUSTER
lig 21
ZN
b
300 1ZINC ION
lig 22
NDP
d
401 48 PHOSPHATE
lig 23
ZMP
j
101 34 BUTANOYL]-BETA-ALANYL}AMINO)ETHYL] TETRAD