Analysis of Ligand-Protein Contacts in PDB entry:
7ZDM


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 39 ligands in PDB entry 7ZDM. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
2MR
4
85 13N3, N4-DIMETHYLARGININE
lig 2
AYA
h
1 8N-ACETYLALANINE
lig 3
FME
K
1 10N-FORMYLMETHIONINE
lig 4
FME
L
1 10N-FORMYLMETHIONINE
lig 5
FME
M
1 10N-FORMYLMETHIONINE
lig 6
AYA
V
1 8N-ACETYLALANINE
lig 7
SEP
k
36 10PHOSPHOSERINE
lig 8
SF4
1
501 8IRON/SULFUR CLUSTER
lig 9
FMN
1
502 31FLAVIN MONONUCLEOTIDE
lig 10
NAI
1
503 441,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTI
lig 11
FES
2
300 4FE2/S2 (INORGANIC) CLUSTER
lig 12
SF4
3
801 8IRON/SULFUR CLUSTER
lig 13
SF4
3
802 8IRON/SULFUR CLUSTER
lig 14
FES
3
803 4FE2/S2 (INORGANIC) CLUSTER
lig 15
K
3
804 1POTASSIUM ION
lig 16
3PE
4
501 401,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 17
SF4
6
201 8IRON/SULFUR CLUSTER
lig 18
PC1
6
202 461,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 19
3PE
6
203 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 20
PC1
9
401 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 21
SF4
9
402 8IRON/SULFUR CLUSTER
lig 22
SF4
9
403 8IRON/SULFUR CLUSTER
lig 23
ZN
b
300 1ZINC ION
lig 24
NDP
d
401 48 PHOSPHATE
lig 25
ZMP
j
101 34 BUTANOYL]-BETA-ALANYL}AMINO)ETHYL] TETRAD
lig 26
3PE
A
201 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 27
3PE
H
401 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 28
3PE
J
201 401,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 29
3PE
L
1001 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 30
PC1
L
1002 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 31
PC1
L
1003 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 32
3PE
M
501 441,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 33
PC1
M
502 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 34
3PE
V
201 271,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 35
3PE
V
202 371,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 36
ZMP
X
101 31 BUTANOYL]-BETA-ALANYL}AMINO)ETHYL] TETRAD
lig 37
AMP
k
501 23ADENOSINE MONOPHOSPHATE
lig 38
3PE
o
501 311,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 39
MYR
s
201 15MYRISTIC ACID