Analysis of Ligand-Protein Contacts in PDB entry:
7ZDP


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 24 ligands in PDB entry 7ZDP. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
2MR
4
85 13N3, N4-DIMETHYLARGININE
lig 2
FME
K
1 10N-FORMYLMETHIONINE
lig 3
FME
L
1 10N-FORMYLMETHIONINE
lig 4
FME
M
1 10N-FORMYLMETHIONINE
lig 5
AYA
V
1 8N-ACETYLALANINE
lig 6
SEP
k
36 10PHOSPHOSERINE
lig 7
AYA
h
1 8N-ACETYLALANINE
lig 8
ZMP
X
101 31 BUTANOYL]-BETA-ALANYL}AMINO)ETHYL] TETRAD
lig 9
AMP
k
501 23ADENOSINE MONOPHOSPHATE
lig 10
MYR
s
201 15MYRISTIC ACID
lig 11
SF4
1
501 8IRON/SULFUR CLUSTER
lig 12
FMN
1
502 31FLAVIN MONONUCLEOTIDE
lig 13
NAI
1
503 441,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTI
lig 14
FES
2
300 4FE2/S2 (INORGANIC) CLUSTER
lig 15
SF4
3
801 8IRON/SULFUR CLUSTER
lig 16
SF4
3
802 8IRON/SULFUR CLUSTER
lig 17
FES
3
803 4FE2/S2 (INORGANIC) CLUSTER
lig 18
K
3
804 1POTASSIUM ION
lig 19
SF4
6
300 8IRON/SULFUR CLUSTER
lig 20
SF4
9
201 8IRON/SULFUR CLUSTER
lig 21
SF4
9
202 8IRON/SULFUR CLUSTER
lig 22
ZN
b
300 1ZINC ION
lig 23
NDP
d
401 48 PHOSPHATE
lig 24
ZMP
j
101 34 BUTANOYL]-BETA-ALANYL}AMINO)ETHYL] TETRAD