Analysis of Ligand-Protein Contacts in PDB entry:
8AM5


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 146 ligands in PDB entry 8AM5. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
FE2
A
401 1FE (II) ION
lig 2
CLA
A
402 65CHLOROPHYLL A
lig 3
CLA
A
403 46CHLOROPHYLL A
lig 4
PHO
A
404 64PHEOPHYTIN A
lig 5
CLA
A
405 50CHLOROPHYLL A
lig 6
BCR
A
406 40BETA-CAROTENE
lig 7
CLA
A
407 65CHLOROPHYLL A
lig 8
PHO
D
401 64PHEOPHYTIN A
lig 9
CLA
D
402 55CHLOROPHYLL A
lig 10
CLA
D
403 46CHLOROPHYLL A
lig 11
HEM
E
101 43PROTOPORPHYRIN IX CONTAINING FE
lig 12
CL0
a
801 65CHLOROPHYLL A ISOMER
lig 13
CLA
a
802 65CHLOROPHYLL A
lig 14
CLA
a
803 65CHLOROPHYLL A
lig 15
CLA
a
804 65CHLOROPHYLL A
lig 16
CLA
a
805 65CHLOROPHYLL A
lig 17
CLA
a
806 65CHLOROPHYLL A
lig 18
CLA
a
807 65CHLOROPHYLL A
lig 19
CLA
a
808 65CHLOROPHYLL A
lig 20
CLA
a
809 65CHLOROPHYLL A
lig 21
CLA
a
810 51CHLOROPHYLL A
lig 22
CLA
a
811 50CHLOROPHYLL A
lig 23
CLA
a
812 65CHLOROPHYLL A
lig 24
CLA
a
813 60CHLOROPHYLL A
lig 25
CLA
a
814 65CHLOROPHYLL A
lig 26
CLA
a
815 65CHLOROPHYLL A
lig 27
CLA
a
816 46CHLOROPHYLL A
lig 28
CLA
a
817 46CHLOROPHYLL A
lig 29
CLA
a
818 65CHLOROPHYLL A
lig 30
CLA
a
819 65CHLOROPHYLL A
lig 31
CLA
a
820 65CHLOROPHYLL A
lig 32
CLA
a
821 65CHLOROPHYLL A
lig 33
CLA
a
822 65CHLOROPHYLL A
lig 34
CLA
a
823 65CHLOROPHYLL A
lig 35
CLA
a
824 65CHLOROPHYLL A
lig 36
CLA
a
825 60CHLOROPHYLL A
lig 37
CLA
a
826 65CHLOROPHYLL A
lig 38
CLA
a
827 65CHLOROPHYLL A
lig 39
CLA
a
828 65CHLOROPHYLL A
lig 40
CLA
a
829 65CHLOROPHYLL A
lig 41
CLA
a
830 65CHLOROPHYLL A
lig 42
CLA
a
831 65CHLOROPHYLL A
lig 43
CLA
a
832 56CHLOROPHYLL A
lig 44
CLA
a
833 60CHLOROPHYLL A
lig 45
CLA
a
834 65CHLOROPHYLL A
lig 46
CLA
a
835 65CHLOROPHYLL A
lig 47
CLA
a
836 65CHLOROPHYLL A
lig 48
CLA
a
837 65CHLOROPHYLL A
lig 49
CLA
a
838 51CHLOROPHYLL A
lig 50
CLA
a
839 65CHLOROPHYLL A
lig 51
CLA
a
840 65CHLOROPHYLL A
lig 52
CLA
a
841 65CHLOROPHYLL A
lig 53
CLA
a
842 65CHLOROPHYLL A
lig 54
CLA
a
843 56CHLOROPHYLL A
lig 55
PQN
a
844 33PHYLLOQUINONE
lig 56
SF4
a
845 8IRON/SULFUR CLUSTER
lig 57
BCR
a
846 40BETA-CAROTENE
lig 58
BCR
a
847 40BETA-CAROTENE
lig 59
BCR
a
848 40BETA-CAROTENE
lig 60
BCR
a
849 40BETA-CAROTENE
lig 61
BCR
a
850 40BETA-CAROTENE
lig 62
BCR
a
851 25BETA-CAROTENE
lig 63
LHG
a
852 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 64
LHG
a
853 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 65
LMG
a
854 401,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 66
LHG
a
855 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 67
CLA
a
856 65CHLOROPHYLL A
lig 68
CLA
a
857 65CHLOROPHYLL A
lig 69
45D
a
858 42BETA,BETA-CAROTENE-4,4'-DIONE
lig 70
BCR
a
859 40BETA-CAROTENE
lig 71
CLA
a
860 65CHLOROPHYLL A
lig 72
CLA
b
801 65CHLOROPHYLL A
lig 73
CLA
b
802 65CHLOROPHYLL A
lig 74
CLA
b
803 65CHLOROPHYLL A
lig 75
CLA
b
804 65CHLOROPHYLL A
lig 76
CLA
b
805 65CHLOROPHYLL A
lig 77
CLA
b
806 65CHLOROPHYLL A
lig 78
CLA
b
807 65CHLOROPHYLL A
lig 79
CLA
b
808 65CHLOROPHYLL A
lig 80
CLA
b
809 56CHLOROPHYLL A
lig 81
CLA
b
810 56CHLOROPHYLL A
lig 82
CLA
b
811 50CHLOROPHYLL A
lig 83
CLA
b
812 65CHLOROPHYLL A
lig 84
CLA
b
813 65CHLOROPHYLL A
lig 85
CLA
b
814 55CHLOROPHYLL A
lig 86
CLA
b
815 56CHLOROPHYLL A
lig 87
CLA
b
816 65CHLOROPHYLL A
lig 88
CLA
b
817 65CHLOROPHYLL A
lig 89
CLA
b
818 60CHLOROPHYLL A
lig 90
CLA
b
819 65CHLOROPHYLL A
lig 91
CLA
b
820 60CHLOROPHYLL A
lig 92
CLA
b
821 46CHLOROPHYLL A
lig 93
CLA
b
822 57CHLOROPHYLL A
lig 94
CLA
b
823 65CHLOROPHYLL A
lig 95
CLA
b
824 55CHLOROPHYLL A
lig 96
CLA
b
825 65CHLOROPHYLL A
lig 97
CLA
b
826 65CHLOROPHYLL A
lig 98
CLA
b
827 65CHLOROPHYLL A
lig 99
CLA
b
828 65CHLOROPHYLL A
lig 100
CLA
b
829 51CHLOROPHYLL A
lig 101
CLA
b
830 50CHLOROPHYLL A
lig 102
CLA
b
831 65CHLOROPHYLL A
lig 103
CLA
b
832 65CHLOROPHYLL A
lig 104
CLA
b
833 65CHLOROPHYLL A
lig 105
CLA
b
834 50CHLOROPHYLL A
lig 106
CLA
b
835 52CHLOROPHYLL A
lig 107
CLA
b
836 65CHLOROPHYLL A
lig 108
CLA
b
837 50CHLOROPHYLL A
lig 109
CLA
b
838 65CHLOROPHYLL A
lig 110
CLA
b
839 65CHLOROPHYLL A
lig 111
CLA
b
840 46CHLOROPHYLL A
lig 112
PQN
b
841 33PHYLLOQUINONE
lig 113
BCR
b
842 40BETA-CAROTENE
lig 114
BCR
b
843 40BETA-CAROTENE
lig 115
ECH
b
844 41BETA,BETA-CAROTEN-4-ONE
lig 116
BCR
b
845 40BETA-CAROTENE
lig 117
BCR
b
846 40BETA-CAROTENE
lig 118
BCR
b
847 40BETA-CAROTENE
lig 119
LMG
b
848 551,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 120
LHG
b
849 381,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 121
LMG
b
850 551,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 122
EQ3
b
851 42(3'R)-3'-HYDROXY-BETA,BETA-CAROTEN-4-ONE
lig 123
ZEX
b
852 42 YL}-2,5,5-TRIMETHYLCYCLOHEX-3-EN-1-OL
lig 124
SF4
c
101 8IRON/SULFUR CLUSTER
lig 125
SF4
c
102 8IRON/SULFUR CLUSTER
lig 126
CLA
f
201 65CHLOROPHYLL A
lig 127
BCR
f
202 40BETA-CAROTENE
lig 128
CLA
f
203 50CHLOROPHYLL A
lig 129
CLA
f
204 50CHLOROPHYLL A
lig 130
ZEX
f
205 42 YL}-2,5,5-TRIMETHYLCYCLOHEX-3-EN-1-OL
lig 131
LHG
f
206 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 132
BCR
i
101 40BETA-CAROTENE
lig 133
BCR
i
102 40BETA-CAROTENE
lig 134
BCR
j
101 40BETA-CAROTENE
lig 135
LMT
j
102 35DODECYL-BETA-D-MALTOSIDE
lig 136
CLA
j
103 55CHLOROPHYLL A
lig 137
CLA
j
104 46CHLOROPHYLL A
lig 138
CLA
k
101 46CHLOROPHYLL A
lig 139
CLA
k
102 45CHLOROPHYLL A
lig 140
BCR
k
103 40BETA-CAROTENE
lig 141
LMG
l
201 501,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 142
CLA
l
202 50CHLOROPHYLL A
lig 143
CLA
l
203 65CHLOROPHYLL A
lig 144
CLA
l
204 52CHLOROPHYLL A
lig 145
BCR
l
205 40BETA-CAROTENE
lig 146
ECH
m
101 41BETA,BETA-CAROTEN-4-ONE