Analysis of Ligand-Protein Contacts in PDB entry:
8AVT


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 103 ligands in PDB entry 8AVT. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
MED
C
1 8D-METHIONINE
lig 2
DSN
C
2 6D-SERINE
lig 3
DTR
C
3 14D-TRYPTOPHAN
lig 4
DLE
C
4 8D-LEUCINE
lig 5
DSG
C
5 8D-ASPARAGINE
lig 6
DPN
C
6 11D-PHENYLALANINE
lig 7
DLE
C
7 8D-LEUCINE
lig 8
DLY
C
8 9D-LYSINE
lig 9
DTY
C
9 12D-TYROSINE
lig 10
DIL
C
10 8D-ISOLEUCINE
lig 11
DAL
C
11 5D-ALANINE
lig 12
DLY
C
12 9D-LYSINE
lig 13
DTY
C
13 12D-TYROSINE
lig 14
DLY
C
15 9D-LYSINE
lig 15
DLY
C
16 9D-LYSINE
lig 16
DAL
C
17 5D-ALANINE
lig 17
DVA
C
18 7D-VALINE
lig 18
DSN
C
19 6D-SERINE
lig 19
DAL
C
20 5D-ALANINE
lig 20
DAL
C
21 5D-ALANINE
lig 21
DTR
C
22 14D-TRYPTOPHAN
lig 22
DLY
C
23 9D-LYSINE
lig 23
DTY
C
24 12D-TYROSINE
lig 24
DLY
C
25 9D-LYSINE
lig 25
DLY
C
27 9D-LYSINE
lig 26
DVA
C
28 7D-VALINE
lig 27
DLE
C
29 8D-LEUCINE
lig 28
DGL
C
30 9D-GLUTAMIC ACID
lig 29
DTR
C
31 14D-TRYPTOPHAN
lig 30
DLE
C
32 8D-LEUCINE
lig 31
DSG
C
33 8D-ASPARAGINE
lig 32
DVA
C
34 7D-VALINE
lig 33
DPR
C
36 7D-PROLINE
lig 34
DTH
C
37 7D-THREONINE
lig 35
DLE
C
38 8D-LEUCINE
lig 36
DGL
C
39 9D-GLUTAMIC ACID
lig 37
DTR
C
40 14D-TRYPTOPHAN
lig 38
DVA
C
41 7D-VALINE
lig 39
DTR
C
42 14D-TRYPTOPHAN
lig 40
DGN
C
43 9D-GLUTAMINE
lig 41
DLY
C
44 9D-LYSINE
lig 42
DLE
C
45 8D-LEUCINE
lig 43
DLY
C
46 9D-LYSINE
lig 44
DLY
C
47 9D-LYSINE
lig 45
DIL
C
48 8D-ISOLEUCINE
lig 46
DAL
C
49 5D-ALANINE
lig 47
DLE
C
51 9D-LEUCINE
lig 48
MED
D
1 8D-METHIONINE
lig 49
DSN
D
2 6D-SERINE
lig 50
DTR
D
3 14D-TRYPTOPHAN
lig 51
DLE
D
4 8D-LEUCINE
lig 52
DSG
D
5 8D-ASPARAGINE
lig 53
DPN
D
6 11D-PHENYLALANINE
lig 54
DLE
D
7 8D-LEUCINE
lig 55
DLY
D
8 9D-LYSINE
lig 56
DTY
D
9 12D-TYROSINE
lig 57
DIL
D
10 8D-ISOLEUCINE
lig 58
DAL
D
11 5D-ALANINE
lig 59
DLY
D
12 9D-LYSINE
lig 60
DTY
D
13 12D-TYROSINE
lig 61
DLY
D
15 9D-LYSINE
lig 62
DLY
D
16 9D-LYSINE
lig 63
DAL
D
17 5D-ALANINE
lig 64
DVA
D
18 7D-VALINE
lig 65
DSN
D
19 6D-SERINE
lig 66
DAL
D
20 5D-ALANINE
lig 67
DAL
D
21 5D-ALANINE
lig 68
DTR
D
22 14D-TRYPTOPHAN
lig 69
DLY
D
23 9D-LYSINE
lig 70
DTY
D
24 12D-TYROSINE
lig 71
DLY
D
25 9D-LYSINE
lig 72
DLY
D
27 9D-LYSINE
lig 73
DVA
D
28 7D-VALINE
lig 74
DLE
D
29 8D-LEUCINE
lig 75
DGL
D
30 9D-GLUTAMIC ACID
lig 76
DTR
D
31 14D-TRYPTOPHAN
lig 77
DLE
D
32 8D-LEUCINE
lig 78
DSG
D
33 8D-ASPARAGINE
lig 79
DVA
D
34 7D-VALINE
lig 80
DPR
D
36 7D-PROLINE
lig 81
DTH
D
37 7D-THREONINE
lig 82
DLE
D
38 8D-LEUCINE
lig 83
DGL
D
39 9D-GLUTAMIC ACID
lig 84
DTR
D
40 14D-TRYPTOPHAN
lig 85
DVA
D
41 7D-VALINE
lig 86
DTR
D
42 14D-TRYPTOPHAN
lig 87
DGN
D
43 9D-GLUTAMINE
lig 88
DLY
D
44 9D-LYSINE
lig 89
DLE
D
45 8D-LEUCINE
lig 90
DLY
D
46 9D-LYSINE
lig 91
DLY
D
47 9D-LYSINE
lig 92
DIL
D
48 8D-ISOLEUCINE
lig 93
DAL
D
49 5D-ALANINE
lig 94
DLE
D
51 9D-LEUCINE
lig 95
EDO
C
101 41,2-ETHANEDIOL
lig 96
EDO
C
102 41,2-ETHANEDIOL
lig 97
PEG
C
103 7DI(HYDROXYETHYL)ETHER
lig 98
EDO
D
101 41,2-ETHANEDIOL
lig 99
G3P
D
102 10SN-GLYCEROL-3-PHOSPHATE
lig 100
EDO
D
103 41,2-ETHANEDIOL
lig 101
EDO
B
101 41,2-ETHANEDIOL
lig 102
GOL
A
101 6GLYCEROL
lig 103
G3P
A
102 10SN-GLYCEROL-3-PHOSPHATE