Analysis of Ligand-Protein Contacts in PDB entry:
8GBT


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 62 ligands in PDB entry 8GBT. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
FME
A
1 10N-FORMYLMETHIONINE
lig 2
FME
B
1 10N-FORMYLMETHIONINE
lig 3
TPO
G
11 11PHOSPHOTHREONINE
lig 4
FME
N
1 10N-FORMYLMETHIONINE
lig 5
FME
O
1 10N-FORMYLMETHIONINE
lig 6
TPO
T
11 11PHOSPHOTHREONINE
lig 7
HEA
A
601 60HEME-A
lig 8
HEA
A
602 60HEME-A
lig 9
CU
A
603 1COPPER (II) ION
lig 10
MG
A
604 1MAGNESIUM ION
lig 11
NA
A
605 1SODIUM ION
lig 12
TGL
A
606 63TRISTEAROYLGLYCEROL
lig 13
PGV
A
607 51 OCTADEC-11-ENOATE
lig 14
CMO
A
608 2CARBON MONOXIDE
lig 15
CUA
B
301 2DINUCLEAR COPPER ION
lig 16
CHD
B
302 29CHOLIC ACID
lig 17
CHD
C
301 29CHOLIC ACID
lig 18
PGV
C
303 51 OCTADEC-11-ENOATE
lig 19
PGV
C
304 51 OCTADEC-11-ENOATE
lig 20
CDL
C
305 100CARDIOLIPIN
lig 21
CHD
C
306 29CHOLIC ACID
lig 22
PSC
E
201 52 17,20-DIEN-1-AMINIUM 4-OXIDE
lig 23
ZN
F
101 1ZINC ION
lig 24
PEK
G
101 53 11,14-TETRAENOATE
lig 25
DMU
G
102 33DECYL-BETA-D-MALTOPYRANOSIDE
lig 26
PEK
G
103 53 11,14-TETRAENOATE
lig 27
CDL
G
104 100CARDIOLIPIN
lig 28
CHD
G
105 29CHOLIC ACID
lig 29
PEK
G
106 53 11,14-TETRAENOATE
lig 30
TGL
I
101 63TRISTEAROYLGLYCEROL
lig 31
SAC
I
102 9N-ACETYL-SERINE
lig 32
CHD
J
101 29CHOLIC ACID
lig 33
TGL
L
101 63TRISTEAROYLGLYCEROL
lig 34
PGV
M
101 51 OCTADEC-11-ENOATE
lig 35
DMU
M
102 33DECYL-BETA-D-MALTOPYRANOSIDE
lig 36
HEA
N
601 60HEME-A
lig 37
HEA
N
602 60HEME-A
lig 38
CU
N
603 1COPPER (II) ION
lig 39
MG
N
604 1MAGNESIUM ION
lig 40
NA
N
605 1SODIUM ION
lig 41
TGL
N
606 63TRISTEAROYLGLYCEROL
lig 42
PGV
N
607 51 OCTADEC-11-ENOATE
lig 43
TGL
N
608 63TRISTEAROYLGLYCEROL
lig 44
CHD
N
609 29CHOLIC ACID
lig 45
CMO
N
610 2CARBON MONOXIDE
lig 46
CUA
O
301 2DINUCLEAR COPPER ION
lig 47
CHD
P
302 29CHOLIC ACID
lig 48
PEK
P
303 53 11,14-TETRAENOATE
lig 49
PGV
P
304 51 OCTADEC-11-ENOATE
lig 50
CDL
P
305 100CARDIOLIPIN
lig 51
CHD
P
306 29CHOLIC ACID
lig 52
DMU
Q
201 33DECYL-BETA-D-MALTOPYRANOSIDE
lig 53
PSC
R
201 52 17,20-DIEN-1-AMINIUM 4-OXIDE
lig 54
ZN
S
101 1ZINC ION
lig 55
PEK
T
101 53 11,14-TETRAENOATE
lig 56
DMU
T
102 33DECYL-BETA-D-MALTOPYRANOSIDE
lig 57
PEK
T
103 53 11,14-TETRAENOATE
lig 58
CDL
T
104 100CARDIOLIPIN
lig 59
PGV
U
101 51 OCTADEC-11-ENOATE
lig 60
SAC
V
101 9N-ACETYL-SERINE
lig 61
TGL
Y
101 63TRISTEAROYLGLYCEROL
lig 62
PGV
Z
101 51 OCTADEC-11-ENOATE