Analysis of Ligand-Protein Contacts in PDB entry:
8GCQ


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 66 ligands in PDB entry 8GCQ. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
FME
A
1 10N-FORMYLMETHIONINE
lig 2
FME
B
1 10N-FORMYLMETHIONINE
lig 3
TPO
G
11 11PHOSPHOTHREONINE
lig 4
FME
N
1 10N-FORMYLMETHIONINE
lig 5
FME
O
1 10N-FORMYLMETHIONINE
lig 6
TPO
T
11 11PHOSPHOTHREONINE
lig 7
CU
A
601 1COPPER (II) ION
lig 8
MG
A
602 1MAGNESIUM ION
lig 9
NA
A
603 1SODIUM ION
lig 10
PGV
A
604 51 OCTADEC-11-ENOATE
lig 11
HEA
A
605 60HEME-A
lig 12
HEA
A
606 60HEME-A
lig 13
OH
A
607 1HYDROXIDE ION
lig 14
CUA
B
301 2DINUCLEAR COPPER ION
lig 15
TGL
B
302 63TRISTEAROYLGLYCEROL
lig 16
PSC
B
303 52 17,20-DIEN-1-AMINIUM 4-OXIDE
lig 17
PGV
C
301 51 OCTADEC-11-ENOATE
lig 18
CHD
C
302 29CHOLIC ACID
lig 19
PEK
C
303 53 11,14-TETRAENOATE
lig 20
PEK
C
304 53 11,14-TETRAENOATE
lig 21
PGV
C
305 51 OCTADEC-11-ENOATE
lig 22
CDL
C
306 100CARDIOLIPIN
lig 23
CHD
C
307 29CHOLIC ACID
lig 24
CDL
C
308 100CARDIOLIPIN
lig 25
DMU
C
309 33DECYL-BETA-D-MALTOPYRANOSIDE
lig 26
DMU
C
310 33DECYL-BETA-D-MALTOPYRANOSIDE
lig 27
PEK
C
311 53 11,14-TETRAENOATE
lig 28
TGL
D
201 63TRISTEAROYLGLYCEROL
lig 29
ZN
F
101 1ZINC ION
lig 30
DMU
G
101 33DECYL-BETA-D-MALTOPYRANOSIDE
lig 31
PGV
H
101 51 OCTADEC-11-ENOATE
lig 32
SAC
I
101 9N-ACETYL-SERINE
lig 33
CHD
J
101 29CHOLIC ACID
lig 34
TGL
L
101 63TRISTEAROYLGLYCEROL
lig 35
DMU
M
101 33DECYL-BETA-D-MALTOPYRANOSIDE
lig 36
CU
N
601 1COPPER (II) ION
lig 37
MG
N
602 1MAGNESIUM ION
lig 38
NA
N
603 1SODIUM ION
lig 39
TGL
N
604 63TRISTEAROYLGLYCEROL
lig 40
PGV
N
605 51 OCTADEC-11-ENOATE
lig 41
HEA
N
606 60HEME-A
lig 42
HEA
N
607 60HEME-A
lig 43
OH
N
608 1HYDROXIDE ION
lig 44
TGL
N
609 63TRISTEAROYLGLYCEROL
lig 45
PGV
N
610 51 OCTADEC-11-ENOATE
lig 46
TGL
O
301 63TRISTEAROYLGLYCEROL
lig 47
CUA
O
302 2DINUCLEAR COPPER ION
lig 48
CHD
O
303 29CHOLIC ACID
lig 49
PEK
P
301 53 11,14-TETRAENOATE
lig 50
DMU
P
302 33DECYL-BETA-D-MALTOPYRANOSIDE
lig 51
CHD
P
303 29CHOLIC ACID
lig 52
PEK
P
304 53 11,14-TETRAENOATE
lig 53
PGV
P
305 51 OCTADEC-11-ENOATE
lig 54
PGV
P
306 51 OCTADEC-11-ENOATE
lig 55
CDL
P
307 100CARDIOLIPIN
lig 56
CHD
P
308 29CHOLIC ACID
lig 57
CDL
P
309 100CARDIOLIPIN
lig 58
DMU
Q
201 33DECYL-BETA-D-MALTOPYRANOSIDE
lig 59
ZN
S
101 1ZINC ION
lig 60
CHD
T
101 29CHOLIC ACID
lig 61
PEK
T
102 53 11,14-TETRAENOATE
lig 62
CHD
T
103 29CHOLIC ACID
lig 63
PSC
V
101 52 17,20-DIEN-1-AMINIUM 4-OXIDE
lig 64
SAC
V
102 9N-ACETYL-SERINE
lig 65
CHD
W
101 29CHOLIC ACID
lig 66
CHD
Y
101 29CHOLIC ACID