Analysis of Ligand-Protein Contacts in PDB entry:
8P5I


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 21 ligands in PDB entry 8P5I. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
TPO
A
180 11PHOSPHOTHREONINE
lig 2
TPO
B
180 11PHOSPHOTHREONINE
lig 3
TPO
C
180 11PHOSPHOTHREONINE
lig 4
TPO
D
180 11PHOSPHOTHREONINE
lig 5
WYX
A
301 30 AMINO]PYRIMIDO[4,5-B][1,4]BENZODIAZEPIN-6
lig 6
MG
A
302 1MAGNESIUM ION
lig 7
MG
A
303 1MAGNESIUM ION
lig 8
NA
A
304 1SODIUM ION
lig 9
WYX
B
301 30 AMINO]PYRIMIDO[4,5-B][1,4]BENZODIAZEPIN-6
lig 10
GOL
B
302 6GLYCEROL
lig 11
MG
B
303 1MAGNESIUM ION
lig 12
MG
B
304 1MAGNESIUM ION
lig 13
NA
B
305 1SODIUM ION
lig 14
WYX
C
301 30 AMINO]PYRIMIDO[4,5-B][1,4]BENZODIAZEPIN-6
lig 15
GOL
C
302 6GLYCEROL
lig 16
MG
C
303 1MAGNESIUM ION
lig 17
MG
C
304 1MAGNESIUM ION
lig 18
WYX
D
301 30 AMINO]PYRIMIDO[4,5-B][1,4]BENZODIAZEPIN-6
lig 19
MG
D
302 1MAGNESIUM ION
lig 20
MG
D
303 1MAGNESIUM ION
lig 21
NA
D
304 1SODIUM ION