Analysis of Ligand-Protein Contacts in PDB entry:
8PMS


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 28 ligands in PDB entry 8PMS. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
E
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
FUC
E
3 10ALPHA-L-FUCOPYRANOSE
lig 4
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
NAG
F
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
BMA
F
3 11BETA-D-MANNOPYRANOSE
lig 7
MAN
F
4 11ALPHA-D-MANNOPYRANOSE
lig 8
FUC
F
5 10ALPHA-L-FUCOPYRANOSE
lig 9
NAG
G
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
NAG
G
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 11
NAG
A
301 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
NAG
A
302 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
GOL
A
303 6GLYCEROL
lig 14
EPE
A
304 154-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULF
lig 15
AKR
A
305 5ACRYLIC ACID
lig 16
AKR
A
306 5ACRYLIC ACID
lig 17
NAG
B
301 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 18
NAG
B
302 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 19
GOL
B
303 6GLYCEROL
lig 20
GOL
B
304 6GLYCEROL
lig 21
EPE
B
305 154-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULF
lig 22
AKR
B
306 5ACRYLIC ACID
lig 23
NAG
C
301 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 24
NAG
C
302 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 25
AKR
C
303 5ACRYLIC ACID
lig 26
NAG
C
304 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 27
NAG
D
301 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 28
NAG
D
302 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE