Analysis of Ligand-Protein Contacts in PDB entry:
8Q25


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 98 ligands in PDB entry 8Q25. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
FME
A
1 10N-FORMYLMETHIONINE
lig 2
2MR
D
85 13N3, N4-DIMETHYLARGININE
lig 3
FME
H
1 10N-FORMYLMETHIONINE
lig 4
FME
J
1 10N-FORMYLMETHIONINE
lig 5
FME
K
1 10N-FORMYLMETHIONINE
lig 6
FME
L
1 10N-FORMYLMETHIONINE
lig 7
FME
M
1 10N-FORMYLMETHIONINE
lig 8
FME
N
1 10N-FORMYLMETHIONINE
lig 9
AYA
Y
1 8N-ACETYLALANINE
lig 10
AYA
b
1 8N-ACETYLALANINE
lig 11
AME
d
1 11N-ACETYLMETHIONINE
lig 12
SAC
i
1 9N-ACETYL-SERINE
lig 13
SAC
m
1 9N-ACETYL-SERINE
lig 14
AME
q
1 11N-ACETYLMETHIONINE
lig 15
AYA
r
1 8N-ACETYLALANINE
lig 16
3PE
A
201 401,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 17
3PE
A
202 421,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 18
PC1
A
203 351,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 19
PC1
A
204 331,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 20
SF4
B
201 8IRON/SULFUR CLUSTER
lig 21
PC1
B
202 461,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 22
PC1
B
203 481,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 23
FES
E
301 4FE2/S2 (INORGANIC) CLUSTER
lig 24
SF4
F
501 8IRON/SULFUR CLUSTER
lig 25
FMN
F
502 31FLAVIN MONONUCLEOTIDE
lig 26
SF4
G
801 8IRON/SULFUR CLUSTER
lig 27
SF4
G
802 8IRON/SULFUR CLUSTER
lig 28
FES
G
803 4FE2/S2 (INORGANIC) CLUSTER
lig 29
K
G
804 1POTASSIUM ION
lig 30
U10
H
401 34UBIQUINONE-10
lig 31
CDL
H
402 58CARDIOLIPIN
lig 32
PC1
H
403 481,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 33
PC1
H
404 411,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 34
PC1
H
405 471,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 35
SF4
I
201 8IRON/SULFUR CLUSTER
lig 36
SF4
I
202 8IRON/SULFUR CLUSTER
lig 37
3PE
I
203 371,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 38
PC1
I
204 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 39
3PE
J
201 371,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 40
3PE
J
202 441,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 41
PC1
J
203 351,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 42
PLC
J
204 35DIUNDECYL PHOSPHATIDYL CHOLINE
lig 43
CDL
L
701 100CARDIOLIPIN
lig 44
3PE
L
702 451,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 45
3PE
L
703 341,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 46
3PE
L
704 411,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 47
PLC
L
705 36DIUNDECYL PHOSPHATIDYL CHOLINE
lig 48
ZN
M
601 1ZINC ION
lig 49
CDL
M
602 100CARDIOLIPIN
lig 50
3PE
M
603 501,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 51
3PE
M
604 451,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 52
PC1
M
605 441,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 53
PC1
M
606 351,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 54
PLC
M
607 34DIUNDECYL PHOSPHATIDYL CHOLINE
lig 55
CDL
N
401 94CARDIOLIPIN
lig 56
3PE
N
402 491,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 57
MG
O
401 1MAGNESIUM ION
lig 58
DGT
O
402 312'-DEOXYGUANOSINE-5'-TRIPHOSPHATE
lig 59
PLC
O
403 31DIUNDECYL PHOSPHATIDYL CHOLINE
lig 60
PLC
O
404 31DIUNDECYL PHOSPHATIDYL CHOLINE
lig 61
NDP
P
501 48 PHOSPHATE
lig 62
3PE
P
502 381,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 63
ZN
R
201 1ZINC ION
lig 64
EHZ
T
101 37 (3~{S})-3-OXIDANYLTETRADECANETHIOATE
lig 65
EHZ
U
101 37 (3~{S})-3-OXIDANYLTETRADECANETHIOATE
lig 66
3PE
Y
201 411,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 67
3PE
Y
202 271,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 68
3PE
Y
203 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 69
3PE
Y
204 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 70
3PE
Y
205 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 71
3PE
Y
206 451,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 72
3PE
Y
207 361,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 73
PLC
Y
208 42DIUNDECYL PHOSPHATIDYL CHOLINE
lig 74
3PE
Z
201 421,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 75
PC1
Z
202 441,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 76
PLC
Z
203 36DIUNDECYL PHOSPHATIDYL CHOLINE
lig 77
3PE
a
101 361,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 78
3PE
b
101 361,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 79
3PE
b
102 471,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 80
PLC
b
103 38DIUNDECYL PHOSPHATIDYL CHOLINE
lig 81
CDL
d
201 65CARDIOLIPIN
lig 82
CDL
d
202 87CARDIOLIPIN
lig 83
3PE
d
203 491,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 84
PC1
d
204 391,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 85
3PE
f
101 241,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 86
3PE
g
201 291,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 87
PLC
g
202 42DIUNDECYL PHOSPHATIDYL CHOLINE
lig 88
PC1
h
201 381,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 89
CHD
i
201 29CHOLIC ACID
lig 90
CDL
i
202 76CARDIOLIPIN
lig 91
PC1
l
701 471,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 92
3PE
m
201 411,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 93
PC1
m
202 411,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 94
MYR
o
201 15MYRISTIC ACID
lig 95
3PE
q
201 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 96
PC1
q
202 491,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 97
CDL
r
201 61CARDIOLIPIN
lig 98
3PE
r
202 301,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI