Analysis of Ligand-Protein Contacts in PDB entry:
8R6F


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 104 ligands in PDB entry 8R6F. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
IAS
O
138 8BETA-L-ASPARTIC ACID
lig 2
AME
V
1 11N-ACETYLMETHIONINE
lig 3
A2M
A
28 232'-O-METHYLADENOSINE 5'-(DIHYDROGEN PHOSPH
lig 4
PSU
A
35 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 5
OMC
A
38 21O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
lig 6
PSU
A
103 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 7
PSU
A
111 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 8
PSU
A
121 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 9
OMU
A
123 21O2'-METHYLURIDINE 5'-MONOPHOSPHATE
lig 10
A2M
A
162 232'-O-METHYLADENOSINE 5'-(DIHYDROGEN PHOSPH
lig 11
OMU
A
168 21O2'-METHYLURIDINE 5'-MONOPHOSPHATE
lig 12
PSU
A
208 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 13
OMG
A
246 24O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 14
PSU
A
255 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 15
PSU
A
258 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 16
PSU
A
300 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 17
PSU
A
306 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 18
PSU
A
308 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 19
PSU
A
362 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 20
OMG
A
392 24O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 21
OMC
A
418 21O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
lig 22
A2M
A
424 232'-O-METHYLADENOSINE 5'-(DIHYDROGEN PHOSPH
lig 23
OMG
A
434 24O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 24
A2M
A
440 232'-O-METHYLADENOSINE 5'-(DIHYDROGEN PHOSPH
lig 25
A2M
A
468 232'-O-METHYLADENOSINE 5'-(DIHYDROGEN PHOSPH
lig 26
A2M
A
545 232'-O-METHYLADENOSINE 5'-(DIHYDROGEN PHOSPH
lig 27
OMG
A
599 24O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 28
UY1
A
604 212'-O-METHYLPSEUDOURIDINE-5'-MONOPHOSPHATE
lig 29
PSU
A
606 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 30
PSU
A
607 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 31
OMU
A
615 21O2'-METHYLURIDINE 5'-MONOPHOSPHATE
lig 32
A2M
A
623 232'-O-METHYLADENOSINE 5'-(DIHYDROGEN PHOSPH
lig 33
PSU
A
636 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 34
PSU
A
764 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 35
PSU
A
765 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 36
A2M
A
802 232'-O-METHYLADENOSINE 5'-(DIHYDROGEN PHOSPH
lig 37
PSU
A
806 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 38
PSU
A
811 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 39
A2M
A
979 232'-O-METHYLADENOSINE 5'-(DIHYDROGEN PHOSPH
lig 40
PSU
A
1004 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 41
OMU
A
1014 21O2'-METHYLURIDINE 5'-MONOPHOSPHATE
lig 42
PSU
A
1084 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 43
PSU
A
1100 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 44
PSU
A
1108 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 45
PSU
A
1122 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 46
OMG
A
1131 24O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 47
PSU
A
1295 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 48
OMG
A
1300 24O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 49
PSU
A
1306 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 50
PSU
A
1310 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 51
PSU
A
1637 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 52
OMC
A
1648 21O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
lig 53
A2M
A
1761 232'-O-METHYLADENOSINE 5'-(DIHYDROGEN PHOSPH
lig 54
6MZ
A
1774 23N6-METHYLADENOSINE-5'-MONOPHOSPHATE
lig 55
4AC
A
1784 23N(4)-ACETYLCYTIDINE-5'-MONOPHOSPHATE
lig 56
MA6
A
1792 246N-DIMETHYLADENOSINE-5'-MONOPHOSHATE
lig 57
MA6
A
1793 246N-DIMETHYLADENOSINE-5'-MONOPHOSHATE
lig 58
ZN
a
201 1ZINC ION
lig 59
MG
G
301 1MAGNESIUM ION
lig 60
K
A
1901 1POTASSIUM ION
lig 61
K
A
1902 1POTASSIUM ION
lig 62
K
A
1903 1POTASSIUM ION
lig 63
K
A
1904 1POTASSIUM ION
lig 64
K
A
1905 1POTASSIUM ION
lig 65
K
A
1906 1POTASSIUM ION
lig 66
K
A
1907 1POTASSIUM ION
lig 67
K
A
1908 1POTASSIUM ION
lig 68
K
A
1909 1POTASSIUM ION
lig 69
K
A
1910 1POTASSIUM ION
lig 70
K
A
1911 1POTASSIUM ION
lig 71
K
A
1912 1POTASSIUM ION
lig 72
K
A
1913 1POTASSIUM ION
lig 73
K
A
1914 1POTASSIUM ION
lig 74
MG
A
1915 1MAGNESIUM ION
lig 75
MG
A
1916 1MAGNESIUM ION
lig 76
MG
A
1917 1MAGNESIUM ION
lig 77
MG
A
1918 1MAGNESIUM ION
lig 78
MG
A
1919 1MAGNESIUM ION
lig 79
MG
A
1920 1MAGNESIUM ION
lig 80
MG
A
1921 1MAGNESIUM ION
lig 81
MG
A
1922 1MAGNESIUM ION
lig 82
MG
A
1923 1MAGNESIUM ION
lig 83
MG
A
1924 1MAGNESIUM ION
lig 84
MG
A
1925 1MAGNESIUM ION
lig 85
MG
A
1926 1MAGNESIUM ION
lig 86
MG
A
1927 1MAGNESIUM ION
lig 87
MG
A
1928 1MAGNESIUM ION
lig 88
MG
A
1929 1MAGNESIUM ION
lig 89
MG
A
1930 1MAGNESIUM ION
lig 90
MG
A
1931 1MAGNESIUM ION
lig 91
MG
A
1932 1MAGNESIUM ION
lig 92
MG
A
1933 1MAGNESIUM ION
lig 93
MG
A
1934 1MAGNESIUM ION
lig 94
MG
A
1935 1MAGNESIUM ION
lig 95
MG
A
1936 1MAGNESIUM ION
lig 96
MG
A
1937 1MAGNESIUM ION
lig 97
MG
A
1938 1MAGNESIUM ION
lig 98
MG
A
1939 1MAGNESIUM ION
lig 99
MG
A
1940 1MAGNESIUM ION
lig 100
MG
A
1941 1MAGNESIUM ION
lig 101
MG
A
1942 1MAGNESIUM ION
lig 102
MG
A
1943 1MAGNESIUM ION
lig 103
MG
A
1944 1MAGNESIUM ION
lig 104
MG
A
1945 1MAGNESIUM ION