Analysis of Ligand-Protein Contacts in PDB entry:
8V88


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 60 ligands in PDB entry 8V88. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
F
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
NAG
G
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 4
NAG
G
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
BMA
G
3 11BETA-D-MANNOPYRANOSE
lig 6
NAG
H
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
NAG
H
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
NAG
I
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
NAG
I
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
BMA
I
3 11BETA-D-MANNOPYRANOSE
lig 11
NAG
J
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
NAG
J
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
NAG
K
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 14
NAG
K
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 15
BMA
K
3 11BETA-D-MANNOPYRANOSE
lig 16
NAG
L
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 17
NAG
L
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 18
NAG
M
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 19
NAG
M
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 20
BMA
M
3 11BETA-D-MANNOPYRANOSE
lig 21
NAG
N
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 22
NAG
N
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 23
NAG
O
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 24
NAG
O
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 25
BMA
O
3 11BETA-D-MANNOPYRANOSE
lig 26
CA
A
501 1CALCIUM ION
lig 27
NAG
A
502 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 28
POV
A
503 45 ENOYLOXY]PROPYL 2-(TRIMETHYLAMMONIO)ETHYL
lig 29
POV
A
504 47 ENOYLOXY]PROPYL 2-(TRIMETHYLAMMONIO)ETHYL
lig 30
9Z9
A
505 39 (METHOXYMETHYL)BUTOXY]SPIROST-5-EN
lig 31
EPJ
A
506 14EPIBATIDINE
lig 32
YLI
A
507 24 CYCLOPENTA[C]QUINOLINE-8-SULFONAMIDE
lig 33
POV
A
508 47 ENOYLOXY]PROPYL 2-(TRIMETHYLAMMONIO)ETHYL
lig 34
CA
B
501 1CALCIUM ION
lig 35
NAG
B
502 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 36
POV
B
503 45 ENOYLOXY]PROPYL 2-(TRIMETHYLAMMONIO)ETHYL
lig 37
POV
B
504 47 ENOYLOXY]PROPYL 2-(TRIMETHYLAMMONIO)ETHYL
lig 38
9Z9
B
505 39 (METHOXYMETHYL)BUTOXY]SPIROST-5-EN
lig 39
EPJ
B
506 14EPIBATIDINE
lig 40
YLI
B
507 24 CYCLOPENTA[C]QUINOLINE-8-SULFONAMIDE
lig 41
CA
C
501 1CALCIUM ION
lig 42
NAG
C
502 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 43
POV
C
503 45 ENOYLOXY]PROPYL 2-(TRIMETHYLAMMONIO)ETHYL
lig 44
POV
C
504 47 ENOYLOXY]PROPYL 2-(TRIMETHYLAMMONIO)ETHYL
lig 45
9Z9
C
505 39 (METHOXYMETHYL)BUTOXY]SPIROST-5-EN
lig 46
EPJ
C
506 14EPIBATIDINE
lig 47
YLI
C
507 24 CYCLOPENTA[C]QUINOLINE-8-SULFONAMIDE
lig 48
CA
D
501 1CALCIUM ION
lig 49
NAG
D
502 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 50
POV
D
503 45 ENOYLOXY]PROPYL 2-(TRIMETHYLAMMONIO)ETHYL
lig 51
POV
D
504 47 ENOYLOXY]PROPYL 2-(TRIMETHYLAMMONIO)ETHYL
lig 52
9Z9
D
505 39 (METHOXYMETHYL)BUTOXY]SPIROST-5-EN
lig 53
EPJ
D
506 14EPIBATIDINE
lig 54
YLI
D
507 24 CYCLOPENTA[C]QUINOLINE-8-SULFONAMIDE
lig 55
CA
E
501 1CALCIUM ION
lig 56
NAG
E
502 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 57
POV
E
503 45 ENOYLOXY]PROPYL 2-(TRIMETHYLAMMONIO)ETHYL
lig 58
9Z9
E
504 39 (METHOXYMETHYL)BUTOXY]SPIROST-5-EN
lig 59
EPJ
E
505 14EPIBATIDINE
lig 60
YLI
E
506 24 CYCLOPENTA[C]QUINOLINE-8-SULFONAMIDE