Analysis of Ligand-Protein Contacts in PDB entry:
8Y1M


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 33 ligands in PDB entry 8Y1M. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
XYP
C
1 10BETA-D-XYLOPYRANOSE
lig 2
XYP
C
2 9BETA-D-XYLOPYRANOSE
lig 3
XYP
D
1 10BETA-D-XYLOPYRANOSE
lig 4
XYP
D
2 9BETA-D-XYLOPYRANOSE
lig 5
XYP
E
1 10BETA-D-XYLOPYRANOSE
lig 6
XYP
E
2 9BETA-D-XYLOPYRANOSE
lig 7
XYP
F
1 10BETA-D-XYLOPYRANOSE
lig 8
XYP
F
2 9BETA-D-XYLOPYRANOSE
lig 9
CA
A
501 1CALCIUM ION
lig 10
CA
A
502 1CALCIUM ION
lig 11
CA
A
503 1CALCIUM ION
lig 12
CA
A
504 1CALCIUM ION
lig 13
CA
A
505 1CALCIUM ION
lig 14
ACT
A
506 4ACETATE ION
lig 15
ACT
A
507 4ACETATE ION
lig 16
MPD
A
508 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 17
MPD
A
509 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 18
MPD
A
510 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 19
MPD
A
511 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 20
MPD
A
512 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 21
TRS
A
513 82-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
lig 22
TRS
A
514 82-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
lig 23
PEG
A
515 7DI(HYDROXYETHYL)ETHER
lig 24
CA
B
501 1CALCIUM ION
lig 25
CA
B
502 1CALCIUM ION
lig 26
CA
B
503 1CALCIUM ION
lig 27
CA
B
504 1CALCIUM ION
lig 28
ACT
B
505 4ACETATE ION
lig 29
ACT
B
506 4ACETATE ION
lig 30
MPD
B
507 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 31
MPD
B
508 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 32
TRS
B
509 82-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
lig 33
PEG
B
510 7DI(HYDROXYETHYL)ETHER