Analysis of Ligand-Protein Contacts in PDB entry:
8YPZ


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 23 ligands in PDB entry 8YPZ. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
APC
A
1001 31DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ES
lig 2
HSX
A
1002 145-O-PHOSPHONO-ALPHA-D-RIBOFURANOSE
lig 3
GDP
A
1003 28GUANOSINE-5'-DIPHOSPHATE
lig 4
GDP
A
1004 28GUANOSINE-5'-DIPHOSPHATE
lig 5
APC
A
1005 31DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ES
lig 6
PO4
A
1006 5PHOSPHATE ION
lig 7
APC
B
1001 31DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ES
lig 8
HSX
B
1002 145-O-PHOSPHONO-ALPHA-D-RIBOFURANOSE
lig 9
PO4
B
1003 5PHOSPHATE ION
lig 10
APC
C
1001 31DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ES
lig 11
HSX
C
1002 145-O-PHOSPHONO-ALPHA-D-RIBOFURANOSE
lig 12
GDP
C
1003 24GUANOSINE-5'-DIPHOSPHATE
lig 13
GDP
C
1004 28GUANOSINE-5'-DIPHOSPHATE
lig 14
PO4
C
1005 5PHOSPHATE ION
lig 15
APC
D
1001 31DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ES
lig 16
PO4
D
1002 5PHOSPHATE ION
lig 17
PO4
D
1003 5PHOSPHATE ION
lig 18
APC
E
1001 31DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ES
lig 19
HSX
E
1002 145-O-PHOSPHONO-ALPHA-D-RIBOFURANOSE
lig 20
GDP
E
1003 28GUANOSINE-5'-DIPHOSPHATE
lig 21
GDP
F
3001 28GUANOSINE-5'-DIPHOSPHATE
lig 22
HSX
F
3002 145-O-PHOSPHONO-ALPHA-D-RIBOFURANOSE
lig 23
PO4
F
3003 5PHOSPHATE ION