Analysis of Ligand-Protein Contacts in PDB entry:
8BFD


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 56 ligands in PDB entry 8BFD. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
ACE
A
0 3ACETYL GROUP
lig 2
AIB
A
3 6ALPHA-AMINOISOBUTYRIC ACID
lig 3
AIB
A
4 6ALPHA-AMINOISOBUTYRIC ACID
lig 4
AIB
A
5 6ALPHA-AMINOISOBUTYRIC ACID
lig 5
AIB
A
6 6ALPHA-AMINOISOBUTYRIC ACID
lig 6
AIB
A
9 6ALPHA-AMINOISOBUTYRIC ACID
lig 7
AIB
A
10 6ALPHA-AMINOISOBUTYRIC ACID
lig 8
AIB
A
11 6ALPHA-AMINOISOBUTYRIC ACID
lig 9
AIB
A
12 6ALPHA-AMINOISOBUTYRIC ACID
lig 10
AIB
A
15 6ALPHA-AMINOISOBUTYRIC ACID
lig 11
AIB
A
16 6ALPHA-AMINOISOBUTYRIC ACID
lig 12
AIB
A
17 6ALPHA-AMINOISOBUTYRIC ACID
lig 13
AIB
A
18 6ALPHA-AMINOISOBUTYRIC ACID
lig 14
AIB
A
21 6ALPHA-AMINOISOBUTYRIC ACID
lig 15
AIB
A
22 6ALPHA-AMINOISOBUTYRIC ACID
lig 16
AIB
A
23 6ALPHA-AMINOISOBUTYRIC ACID
lig 17
AIB
A
24 6ALPHA-AMINOISOBUTYRIC ACID
lig 18
AIB
A
26 6ALPHA-AMINOISOBUTYRIC ACID
lig 19
AIB
A
27 6ALPHA-AMINOISOBUTYRIC ACID
lig 20
AIB
A
28 6ALPHA-AMINOISOBUTYRIC ACID
lig 21
NH2
A
32 1AMINO GROUP
lig 22
ACE
B
0 3ACETYL GROUP
lig 23
DGL
B
2 9D-GLUTAMIC ACID
lig 24
AIB
B
3 6ALPHA-AMINOISOBUTYRIC ACID
lig 25
AIB
B
4 6ALPHA-AMINOISOBUTYRIC ACID
lig 26
AIB
B
5 6ALPHA-AMINOISOBUTYRIC ACID
lig 27
AIB
B
6 6ALPHA-AMINOISOBUTYRIC ACID
lig 28
DLY
B
7 9D-LYSINE
lig 29
DGL
B
8 9D-GLUTAMIC ACID
lig 30
AIB
B
9 6ALPHA-AMINOISOBUTYRIC ACID
lig 31
AIB
B
10 6ALPHA-AMINOISOBUTYRIC ACID
lig 32
AIB
B
11 6ALPHA-AMINOISOBUTYRIC ACID
lig 33
AIB
B
12 6ALPHA-AMINOISOBUTYRIC ACID
lig 34
DLY
B
13 9D-LYSINE
lig 35
DGL
B
14 9D-GLUTAMIC ACID
lig 36
AIB
B
15 6ALPHA-AMINOISOBUTYRIC ACID
lig 37
AIB
B
16 6ALPHA-AMINOISOBUTYRIC ACID
lig 38
AIB
B
17 6ALPHA-AMINOISOBUTYRIC ACID
lig 39
AIB
B
18 6ALPHA-AMINOISOBUTYRIC ACID
lig 40
DLY
B
19 9D-LYSINE
lig 41
DGL
B
20 9D-GLUTAMIC ACID
lig 42
AIB
B
21 6ALPHA-AMINOISOBUTYRIC ACID
lig 43
AIB
B
22 6ALPHA-AMINOISOBUTYRIC ACID
lig 44
AIB
B
23 6ALPHA-AMINOISOBUTYRIC ACID
lig 45
AIB
B
24 6ALPHA-AMINOISOBUTYRIC ACID
lig 46
DLY
B
25 9D-LYSINE
lig 47
AIB
B
26 6ALPHA-AMINOISOBUTYRIC ACID
lig 48
AIB
B
27 6ALPHA-AMINOISOBUTYRIC ACID
lig 49
AIB
B
28 6ALPHA-AMINOISOBUTYRIC ACID
lig 50
DTR
B
29 14D-TRYPTOPHAN
lig 51
DLY
B
30 5D-LYSINE
lig 52
NA
A
101 1SODIUM ION
lig 53
NA
A
102 1SODIUM ION
lig 54
PEG
A
103 7DI(HYDROXYETHYL)ETHER
lig 55
NA
B
101 1SODIUM ION
lig 56
NA
B
102 1SODIUM ION