Analysis of Ligand-Protein Contacts in PDB entry:
8CEP


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 118 ligands in PDB entry 8CEP. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
PSU
A
516 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 2
G7M
A
527 24N7-METHYL-GUANOSINE-5'-MONOPHOSPHATE
lig 3
4OC
A
1402 224N,O2'-METHYLCYTIDINE-5'-MONOPHOSPHATE
lig 4
5MC
A
1407 215-METHYLCYTIDINE-5'-MONOPHOSPHATE
lig 5
UR3
A
1498 213-METHYLURIDINE-5'-MONOPHOSHATE
lig 6
2MG
A
1516 242N-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 7
MA6
A
1518 246N-DIMETHYLADENOSINE-5'-MONOPHOSHATE
lig 8
MA6
A
1519 246N-DIMETHYLADENOSINE-5'-MONOPHOSHATE
lig 9
IAS
K
119 8BETA-L-ASPARTIC ACID
lig 10
D2T
L
89 10(3R)-3-(METHYLSULFANYL)-L-ASPARTIC ACID
lig 11
PSU
a
1911 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 12
3TD
a
1915 21 TETRAHYDROPYRIMIDIN-5-YL)-5-O-PHOSPHONO-D
lig 13
PSU
a
1917 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 14
KBE
V
1 9BETA-LYSINE
lig 15
DPP
V
2 6DIAMINOPROPANOIC ACID
lig 16
UAL
V
3 9(2Z)-2-AMINO-3-(CARBAMOYLAMINO)PROP-2-ENOI
lig 17
MYN
V
4 11 YL]ETHANOIC ACID
lig 18
DPP
V
5 6DIAMINOPROPANOIC ACID
lig 19
KBE
B
1 9BETA-LYSINE
lig 20
DPP
B
2 6DIAMINOPROPANOIC ACID
lig 21
UAL
B
3 9(2Z)-2-AMINO-3-(CARBAMOYLAMINO)PROP-2-ENOI
lig 22
MYN
B
4 11 YL]ETHANOIC ACID
lig 23
DPP
B
5 6DIAMINOPROPANOIC ACID
lig 24
KBE
C
1 9BETA-LYSINE
lig 25
DPP
C
2 6DIAMINOPROPANOIC ACID
lig 26
UAL
C
3 9(2Z)-2-AMINO-3-(CARBAMOYLAMINO)PROP-2-ENOI
lig 27
MYN
C
4 11 YL]ETHANOIC ACID
lig 28
DPP
C
5 6DIAMINOPROPANOIC ACID
lig 29
KBE
G
1 9BETA-LYSINE
lig 30
DPP
G
2 6DIAMINOPROPANOIC ACID
lig 31
UAL
G
3 9(2Z)-2-AMINO-3-(CARBAMOYLAMINO)PROP-2-ENOI
lig 32
MYN
G
4 11 YL]ETHANOIC ACID
lig 33
DPP
G
5 6DIAMINOPROPANOIC ACID
lig 34
KBE
I
1 9BETA-LYSINE
lig 35
DPP
I
2 6DIAMINOPROPANOIC ACID
lig 36
UAL
I
3 9(2Z)-2-AMINO-3-(CARBAMOYLAMINO)PROP-2-ENOI
lig 37
MYN
I
4 11 YL]ETHANOIC ACID
lig 38
DPP
I
5 6DIAMINOPROPANOIC ACID
lig 39
K
A
1601 1POTASSIUM ION
lig 40
K
A
1602 1POTASSIUM ION
lig 41
KSG
A
1603 26 TETRADEOXY-ALPHA-D-ARABINO-HEXOPYRANOSIDE
lig 42
MG
A
1604 1MAGNESIUM ION
lig 43
MG
A
1605 1MAGNESIUM ION
lig 44
MG
A
1606 1MAGNESIUM ION
lig 45
MG
A
1607 1MAGNESIUM ION
lig 46
MG
A
1608 1MAGNESIUM ION
lig 47
MG
A
1609 1MAGNESIUM ION
lig 48
MG
A
1610 1MAGNESIUM ION
lig 49
MG
A
1611 1MAGNESIUM ION
lig 50
MG
A
1612 1MAGNESIUM ION
lig 51
MG
A
1613 1MAGNESIUM ION
lig 52
MG
A
1614 1MAGNESIUM ION
lig 53
MG
A
1615 1MAGNESIUM ION
lig 54
MG
A
1616 1MAGNESIUM ION
lig 55
MG
A
1617 1MAGNESIUM ION
lig 56
MG
A
1618 1MAGNESIUM ION
lig 57
MG
A
1619 1MAGNESIUM ION
lig 58
MG
A
1620 1MAGNESIUM ION
lig 59
MG
A
1621 1MAGNESIUM ION
lig 60
MG
A
1622 1MAGNESIUM ION
lig 61
MG
A
1623 1MAGNESIUM ION
lig 62
MG
A
1624 1MAGNESIUM ION
lig 63
MG
A
1625 1MAGNESIUM ION
lig 64
MG
A
1626 1MAGNESIUM ION
lig 65
MG
A
1627 1MAGNESIUM ION
lig 66
MG
A
1628 1MAGNESIUM ION
lig 67
MG
A
1629 1MAGNESIUM ION
lig 68
MG
A
1630 1MAGNESIUM ION
lig 69
MG
A
1631 1MAGNESIUM ION
lig 70
MG
A
1632 1MAGNESIUM ION
lig 71
MG
A
1633 1MAGNESIUM ION
lig 72
MG
A
1634 1MAGNESIUM ION
lig 73
MG
A
1635 1MAGNESIUM ION
lig 74
MG
A
1636 1MAGNESIUM ION
lig 75
MG
A
1637 1MAGNESIUM ION
lig 76
MG
A
1638 1MAGNESIUM ION
lig 77
MG
A
1639 1MAGNESIUM ION
lig 78
MG
A
1640 1MAGNESIUM ION
lig 79
MG
A
1641 1MAGNESIUM ION
lig 80
MG
A
1642 1MAGNESIUM ION
lig 81
MG
A
1643 1MAGNESIUM ION
lig 82
K
A
1644 1POTASSIUM ION
lig 83
K
A
1645 1POTASSIUM ION
lig 84
K
A
1646 1POTASSIUM ION
lig 85
K
A
1647 1POTASSIUM ION
lig 86
K
A
1648 1POTASSIUM ION
lig 87
K
A
1649 1POTASSIUM ION
lig 88
K
A
1650 1POTASSIUM ION
lig 89
K
A
1651 1POTASSIUM ION
lig 90
K
A
1652 1POTASSIUM ION
lig 91
K
A
1653 1POTASSIUM ION
lig 92
K
A
1654 1POTASSIUM ION
lig 93
K
A
1655 1POTASSIUM ION
lig 94
K
A
1656 1POTASSIUM ION
lig 95
K
A
1657 1POTASSIUM ION
lig 96
K
A
1658 1POTASSIUM ION
lig 97
K
A
1659 1POTASSIUM ION
lig 98
K
A
1660 1POTASSIUM ION
lig 99
K
A
1661 1POTASSIUM ION
lig 100
K
A
1662 1POTASSIUM ION
lig 101
K
A
1663 1POTASSIUM ION
lig 102
K
A
1664 1POTASSIUM ION
lig 103
MG
A
1665 1MAGNESIUM ION
lig 104
MG
A
1666 1MAGNESIUM ION
lig 105
MG
A
1667 1MAGNESIUM ION
lig 106
MG
A
1668 1MAGNESIUM ION
lig 107
MG
A
1669 1MAGNESIUM ION
lig 108
MG
A
1670 1MAGNESIUM ION
lig 109
MG
A
1671 1MAGNESIUM ION
lig 110
MG
A
1672 1MAGNESIUM ION
lig 111
MG
A
1673 1MAGNESIUM ION
lig 112
MG
A
1674 1MAGNESIUM ION
lig 113
MG
A
1675 1MAGNESIUM ION
lig 114
MG
A
1676 1MAGNESIUM ION
lig 115
MG
A
1677 1MAGNESIUM ION
lig 116
MG
A
1678 1MAGNESIUM ION
lig 117
K
D
301 1POTASSIUM ION
lig 118
K
F
201 1POTASSIUM ION