Analysis of Ligand-Protein Contacts in PDB entry:
8CGU


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 99 ligands in PDB entry 8CGU. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
PSU
A
516 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 2
G7M
A
527 24N7-METHYL-GUANOSINE-5'-MONOPHOSPHATE
lig 3
4OC
A
1402 224N,O2'-METHYLCYTIDINE-5'-MONOPHOSPHATE
lig 4
5MC
A
1407 215-METHYLCYTIDINE-5'-MONOPHOSPHATE
lig 5
UR3
A
1498 213-METHYLURIDINE-5'-MONOPHOSHATE
lig 6
2MG
A
1516 242N-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 7
MA6
A
1518 246N-DIMETHYLADENOSINE-5'-MONOPHOSHATE
lig 8
MA6
A
1519 246N-DIMETHYLADENOSINE-5'-MONOPHOSHATE
lig 9
IAS
K
119 8BETA-L-ASPARTIC ACID
lig 10
D2T
L
89 10(3R)-3-(METHYLSULFANYL)-L-ASPARTIC ACID
lig 11
PSU
a
1911 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 12
3TD
a
1915 21 TETRAHYDROPYRIMIDIN-5-YL)-5-O-PHOSPHONO-D
lig 13
PSU
a
1917 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 14
K
A
1601 1POTASSIUM ION
lig 15
K
A
1602 1POTASSIUM ION
lig 16
LLL
A
1603 31 (METHYLAMINO)-TETRAHYDRO-2H-PYRAN-3,5-DIO
lig 17
LLL
A
1604 31 (METHYLAMINO)-TETRAHYDRO-2H-PYRAN-3,5-DIO
lig 18
LLL
A
1605 31 (METHYLAMINO)-TETRAHYDRO-2H-PYRAN-3,5-DIO
lig 19
LLL
A
1606 31 (METHYLAMINO)-TETRAHYDRO-2H-PYRAN-3,5-DIO
lig 20
MG
A
1607 1MAGNESIUM ION
lig 21
MG
A
1608 1MAGNESIUM ION
lig 22
MG
A
1609 1MAGNESIUM ION
lig 23
MG
A
1610 1MAGNESIUM ION
lig 24
MG
A
1611 1MAGNESIUM ION
lig 25
MG
A
1612 1MAGNESIUM ION
lig 26
MG
A
1613 1MAGNESIUM ION
lig 27
MG
A
1614 1MAGNESIUM ION
lig 28
MG
A
1615 1MAGNESIUM ION
lig 29
MG
A
1616 1MAGNESIUM ION
lig 30
MG
A
1617 1MAGNESIUM ION
lig 31
MG
A
1618 1MAGNESIUM ION
lig 32
MG
A
1619 1MAGNESIUM ION
lig 33
MG
A
1620 1MAGNESIUM ION
lig 34
MG
A
1621 1MAGNESIUM ION
lig 35
MG
A
1622 1MAGNESIUM ION
lig 36
MG
A
1623 1MAGNESIUM ION
lig 37
MG
A
1624 1MAGNESIUM ION
lig 38
MG
A
1625 1MAGNESIUM ION
lig 39
MG
A
1626 1MAGNESIUM ION
lig 40
MG
A
1627 1MAGNESIUM ION
lig 41
MG
A
1628 1MAGNESIUM ION
lig 42
MG
A
1629 1MAGNESIUM ION
lig 43
MG
A
1630 1MAGNESIUM ION
lig 44
MG
A
1631 1MAGNESIUM ION
lig 45
MG
A
1632 1MAGNESIUM ION
lig 46
MG
A
1633 1MAGNESIUM ION
lig 47
MG
A
1634 1MAGNESIUM ION
lig 48
MG
A
1635 1MAGNESIUM ION
lig 49
MG
A
1636 1MAGNESIUM ION
lig 50
MG
A
1637 1MAGNESIUM ION
lig 51
MG
A
1638 1MAGNESIUM ION
lig 52
MG
A
1639 1MAGNESIUM ION
lig 53
MG
A
1640 1MAGNESIUM ION
lig 54
MG
A
1641 1MAGNESIUM ION
lig 55
MG
A
1642 1MAGNESIUM ION
lig 56
MG
A
1643 1MAGNESIUM ION
lig 57
MG
A
1644 1MAGNESIUM ION
lig 58
MG
A
1645 1MAGNESIUM ION
lig 59
MG
A
1646 1MAGNESIUM ION
lig 60
K
A
1647 1POTASSIUM ION
lig 61
K
A
1648 1POTASSIUM ION
lig 62
K
A
1649 1POTASSIUM ION
lig 63
K
A
1650 1POTASSIUM ION
lig 64
K
A
1651 1POTASSIUM ION
lig 65
K
A
1652 1POTASSIUM ION
lig 66
K
A
1653 1POTASSIUM ION
lig 67
K
A
1654 1POTASSIUM ION
lig 68
K
A
1655 1POTASSIUM ION
lig 69
K
A
1656 1POTASSIUM ION
lig 70
K
A
1657 1POTASSIUM ION
lig 71
K
A
1658 1POTASSIUM ION
lig 72
K
A
1659 1POTASSIUM ION
lig 73
K
A
1660 1POTASSIUM ION
lig 74
K
A
1661 1POTASSIUM ION
lig 75
K
A
1662 1POTASSIUM ION
lig 76
K
A
1663 1POTASSIUM ION
lig 77
K
A
1664 1POTASSIUM ION
lig 78
K
A
1665 1POTASSIUM ION
lig 79
K
A
1666 1POTASSIUM ION
lig 80
MG
A
1667 1MAGNESIUM ION
lig 81
MG
A
1668 1MAGNESIUM ION
lig 82
MG
A
1669 1MAGNESIUM ION
lig 83
MG
A
1670 1MAGNESIUM ION
lig 84
MG
A
1671 1MAGNESIUM ION
lig 85
MG
A
1672 1MAGNESIUM ION
lig 86
MG
A
1673 1MAGNESIUM ION
lig 87
MG
A
1674 1MAGNESIUM ION
lig 88
MG
A
1675 1MAGNESIUM ION
lig 89
MG
A
1676 1MAGNESIUM ION
lig 90
MG
A
1677 1MAGNESIUM ION
lig 91
MG
A
1678 1MAGNESIUM ION
lig 92
MG
A
1679 1MAGNESIUM ION
lig 93
MG
A
1680 1MAGNESIUM ION
lig 94
MG
A
1681 1MAGNESIUM ION
lig 95
MG
A
1682 1MAGNESIUM ION
lig 96
MG
A
1683 1MAGNESIUM ION
lig 97
MG
A
1684 1MAGNESIUM ION
lig 98
K
D
301 1POTASSIUM ION
lig 99
K
F
201 1POTASSIUM ION