Analysis of Ligand-Protein Contacts in PDB entry:
8D87


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 19 ligands in PDB entry 8D87. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
D
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
D
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
BMA
D
3 11BETA-D-MANNOPYRANOSE
lig 4
BMA
D
4 11BETA-D-MANNOPYRANOSE
lig 5
NAG
D
5 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
FUL
D
6 10BETA-L-FUCOPYRANOSE
lig 7
NDG
E
1 142-ACETAMIDO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE
lig 8
NAG
E
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
BMA
E
3 11BETA-D-MANNOPYRANOSE
lig 10
MAN
E
4 11ALPHA-D-MANNOPYRANOSE
lig 11
NAG
E
5 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
MAN
E
6 11ALPHA-D-MANNOPYRANOSE
lig 13
FUC
E
7 10ALPHA-L-FUCOPYRANOSE
lig 14
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 15
NAG
F
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 16
BR
A
401 1BROMIDE ION
lig 17
PO4
B
401 5PHOSPHATE ION
lig 18
BR
B
402 1BROMIDE ION
lig 19
BR
C
401 1BROMIDE ION