Analysis of Ligand-Protein Contacts in PDB entry:
8DBE


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 30 ligands in PDB entry 8DBE. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
HSX
A
401 145-O-PHOSPHONO-ALPHA-D-RIBOFURANOSE
lig 2
ADP
A
402 27ADENOSINE-5'-DIPHOSPHATE
lig 3
ADP
A
403 27ADENOSINE-5'-DIPHOSPHATE
lig 4
MG
A
404 1MAGNESIUM ION
lig 5
MG
A
405 1MAGNESIUM ION
lig 6
ADP
A
406 27ADENOSINE-5'-DIPHOSPHATE
lig 7
HSX
B
401 145-O-PHOSPHONO-ALPHA-D-RIBOFURANOSE
lig 8
ADP
B
402 27ADENOSINE-5'-DIPHOSPHATE
lig 9
MG
B
403 1MAGNESIUM ION
lig 10
MG
B
404 1MAGNESIUM ION
lig 11
HSX
C
401 145-O-PHOSPHONO-ALPHA-D-RIBOFURANOSE
lig 12
ADP
C
402 27ADENOSINE-5'-DIPHOSPHATE
lig 13
ADP
C
403 27ADENOSINE-5'-DIPHOSPHATE
lig 14
MG
C
404 1MAGNESIUM ION
lig 15
MG
C
405 1MAGNESIUM ION
lig 16
HSX
D
401 145-O-PHOSPHONO-ALPHA-D-RIBOFURANOSE
lig 17
ADP
D
402 27ADENOSINE-5'-DIPHOSPHATE
lig 18
ADP
D
403 27ADENOSINE-5'-DIPHOSPHATE
lig 19
MG
D
404 1MAGNESIUM ION
lig 20
MG
D
405 1MAGNESIUM ION
lig 21
HSX
E
401 145-O-PHOSPHONO-ALPHA-D-RIBOFURANOSE
lig 22
ADP
E
402 27ADENOSINE-5'-DIPHOSPHATE
lig 23
ADP
E
403 27ADENOSINE-5'-DIPHOSPHATE
lig 24
MG
E
404 1MAGNESIUM ION
lig 25
MG
E
405 1MAGNESIUM ION
lig 26
ADP
E
406 27ADENOSINE-5'-DIPHOSPHATE
lig 27
HSX
F
401 145-O-PHOSPHONO-ALPHA-D-RIBOFURANOSE
lig 28
ADP
F
402 27ADENOSINE-5'-DIPHOSPHATE
lig 29
MG
F
403 1MAGNESIUM ION
lig 30
MG
F
404 1MAGNESIUM ION