Analysis of Ligand-Protein Contacts in PDB entry:
8DNY


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 9 ligands in PDB entry 8DNY. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
YCP
D
2 8(2S)-PIPERIDINE-2-CARBOXYLIC ACID
lig 2
IML
D
3 9N-METHYL-ISOLEUCINE
lig 3
T2X
D
4 9(2R)-2-HYDROXY-5-METHYLHEXANOIC ACID
lig 4
YCP
D
5 8(2S)-PIPERIDINE-2-CARBOXYLIC ACID
lig 5
HLX
D
6 95-METHYL-L-NORLEUCINE
lig 6
T3R
D
7 10N,5-DIMETHYL-L-NORLEUCINE
lig 7
NZC
D
8 8N-METHYLIDENE-L-THREONINE
lig 8
YCP
D
9 8(2S)-PIPERIDINE-2-CARBOXYLIC ACID
lig 9
T3R
D
10 10N,5-DIMETHYL-L-NORLEUCINE