Analysis of Ligand-Protein Contacts in PDB entry:
8DV4


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 25 ligands in PDB entry 8DV4. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
C
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
C
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
BMA
C
3 11BETA-D-MANNOPYRANOSE
lig 4
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
NAG
F
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
BMA
F
3 11BETA-D-MANNOPYRANOSE
lig 7
MAN
F
4 11ALPHA-D-MANNOPYRANOSE
lig 8
EDO
A
601 41,2-ETHANEDIOL
lig 9
GOL
A
602 6GLYCEROL
lig 10
MAN
A
603 11ALPHA-D-MANNOPYRANOSE
lig 11
NAG
A
604 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
CUY
A
605 38TETRACOSYL OCTADECANOATE
lig 13
CL
A
606 1CHLORIDE ION
lig 14
EDO
A
607 41,2-ETHANEDIOL
lig 15
NA
A
608 1SODIUM ION
lig 16
GOL
A
609 6GLYCEROL
lig 17
NA
A
610 1SODIUM ION
lig 18
NA
B
201 1SODIUM ION
lig 19
PIE
D
501 571,2-DIACYL-SN-GLYCERO-3-PHOSPHOINOSITOL
lig 20
EDO
D
502 41,2-ETHANEDIOL
lig 21
EDO
D
503 41,2-ETHANEDIOL
lig 22
EDO
E
301 41,2-ETHANEDIOL
lig 23
EDO
E
302 41,2-ETHANEDIOL
lig 24
CL
E
303 1CHLORIDE ION
lig 25
CL
E
304 1CHLORIDE ION